Regulog HutC - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 11 | 5 |
| Rhodococcus erythropolis PR4 | 9 | 3 |
| Rhodococcus opacus B4 | 6 | 2 |
| Rhodococcus sp. RHA1 | 6 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| fadE15 |
*
Nocardia farcinica IFM 10152 Site: position = -175 score = 6.17151 sequence = AAGCCTGTCTATACAGGAAT Gene: nfa12300: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
*
Rhodococcus erythropolis PR4 Site: position = -174 score = 5.19119 sequence = CAACTTGTCTATACAGGTTT Gene: RER_51260: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: ROP_47330: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: RHA1_ro04636: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| nfa12310 |
Gene: nfa12310: CAIB/BAIF family protein |
Gene: RER_51270: CAIB/BAIF family protein |
Gene: ROP_47320: CAIB/BAIF family protein |
Gene: RHA1_ro04635: CAIB/BAIF family protein |
CAIB/BAIF family protein |
| nfa12320 |
Gene: nfa12320: Transcriptional regulator, IclR family |
Gene: RER_51280: Transcriptional regulator, IclR family |
Gene: ROP_47310: Transcriptional regulator, IclR family |
Gene: RHA1_ro04634: Transcriptional regulator, IclR family |
Transcriptional regulator, IclR family |
| CRON 2. | |||||
| gdh |
*
Nocardia farcinica IFM 10152 Site: position = -131 score = 5.87909 sequence = AGTCCTGTATATACAAGCAA Gene: nfa12260: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form |
*
Rhodococcus erythropolis PR4 Site: position = 67 score = 5.19119 sequence = AAACCTGTATAGACAAGTTG Gene: RER_51250: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form |
*
Rhodococcus opacus B4 Site: position = -90 score = 4.69454 sequence = AGTCCTGTATAGACAACCCC Gene: ROP_47410: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form |
*
Rhodococcus sp. RHA1 Site: position = -90 score = 4.69454 sequence = AGTCCTGTATAGACAACCCC Gene: RHA1_ro04644: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form |
NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form |
| hutC |
Gene: nfa12250: Histidine utilization repressor, GntR family |
Gene: RER_51240: Histidine utilization repressor, GntR family |
Gene: ROP_47420: Histidine utilization repressor, GntR family |
Gene: RHA1_ro04645: Histidine utilization repressor, GntR family |
Histidine utilization repressor, GntR family |
| CRON 3. | |||||
| COG1457 |
*
Nocardia farcinica IFM 10152 Site: position = -99 score = 5.89491 sequence = CAGCCTGTCTATACAGGCAT Gene: nfa12330: Predicted histidine transporter, Purine-cytosine permease family |
*
Rhodococcus erythropolis PR4 Site: position = -151 score = 6.06761 sequence = ACGCCTGTATATACAGGCAT Gene: RER_51330: Predicted histidine transporter, Purine-cytosine permease family |
*
Rhodococcus opacus B4 Site: position = -134 score = 4.69454 sequence = GGGGTTGTCTATACAGGACT Gene: ROP_47400: Predicted histidine transporter, Purine-cytosine permease family |
*
Rhodococcus sp. RHA1 Site: position = -136 score = 4.69454 sequence = GGGGTTGTCTATACAGGACT Gene: RHA1_ro04643: Predicted histidine transporter, Purine-cytosine permease family |
Predicted histidine transporter, Purine-cytosine permease family |
| hutU |
*
Nocardia farcinica IFM 10152 Site: position = -81 score = 5.87909 sequence = TTGCTTGTATATACAGGACT Gene: nfa12270: Urocanate hydratase (EC 4.2.1.49) |
Gene: RER_51340: Urocanate hydratase (EC 4.2.1.49) |
Gene: ROP_47390: Urocanate hydratase (EC 4.2.1.49) |
Gene: RHA1_ro04642: Urocanate hydratase (EC 4.2.1.49) |
Urocanate hydratase (EC 4.2.1.49) |
| hutI |
Gene: nfa12340: Imidazolonepropionase (EC 3.5.2.7) |
Gene: RER_51350: Imidazolonepropionase (EC 3.5.2.7) |
Gene: ROP_47380: Imidazolonepropionase (EC 3.5.2.7) |
Gene: RHA1_ro04641: Imidazolonepropionase (EC 3.5.2.7) |
Imidazolonepropionase (EC 3.5.2.7) |
| hutG |
Gene: nfa12350: Formiminoglutamase (EC 3.5.3.8) |
Gene: RER_51360: Formiminoglutamase (EC 3.5.3.8) |
Gene: ROP_47370: Formiminoglutamase (EC 3.5.3.8) |
Gene: RHA1_ro04640: Formiminoglutamase (EC 3.5.3.8) |
Formiminoglutamase (EC 3.5.3.8) |
| CRON 4. | |||||
| COG1113 |
*
Nocardia farcinica IFM 10152 Site: position = -107 score = 6.17151 sequence = ATTCCTGTATAGACAGGCTT Gene: nfa12290: Predicted histidine transporter, Gamma-aminobutyrate permease family |
Gene: RER_15210: Predicted histidine transporter, Gamma-aminobutyrate permease family |
|
|
Predicted histidine transporter, Gamma-aminobutyrate permease family |
| hutH |
Gene: nfa12280: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: RER_51300: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: ROP_18710: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: RHA1_ro02154: Histidine ammonia-lyase (EC 4.3.1.3) |
Histidine ammonia-lyase (EC 4.3.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |