Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YhcF - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Multidrug resistance; Multidrug efflux
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795 3 1
Clostridium difficile 630 10 3
Clostridium hiranonis DSM 13275 10 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yhcF2
*
Clostridium bartlettii DSM 16795

Site:
position = -41
score = 6.18189
sequence = ATTGTATTAAAGTATTAATACAGT

Gene: CLOBAR_01382: Transcriptional regulator, GntR family
*
Clostridium difficile 630

Site:
position = -46
score = 6.41516
sequence = ATTGTATTAACAACTTAATACAAT

Gene: CD1617: Transcriptional regulator, GntR family
*
Clostridium hiranonis DSM 13275

Site:
position = -44
score = 6.41516
sequence = ATTGTATTAACAACTTAATACAAT

Gene: CLOHIR_00206: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
yhcG2
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01381: ABC-type multidrug transport system, ATPase component
 
Clostridium difficile 630

Gene: CD1618: ABC-type multidrug transport system, ATPase component
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00207: ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component
yhcI2
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01380: ABC-type multidrug transport system, permease component
 
Clostridium difficile 630

Gene: CD1619: ABC-type multidrug transport system, permease component
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00208: ABC-type multidrug transport system, permease component
ABC-type multidrug transport system, permease component
 
CRON 2.
vanZ
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -45
score = 6.89845
sequence = ATTGTATTAATAAAATAATACAAT

Gene: CD1240: Teicoplanin resistance protein
*
Clostridium hiranonis DSM 13275

Site:
position = -78
score = 6.14335
sequence = AGTGTACTAGTTGTATAATACACT

Gene: CLOHIR_00601: Teicoplanin resistance protein
Teicoplanin resistance protein
 
CRON 3.
yhcF
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -39
score = 6.17787
sequence = AGTGTACTATCGTATTAATACACT

Site:
position = -113
score = 5.89536
sequence = AGTGTATTAATCGTATAATACACT

Gene: CD1606: Transcriptional regulator, GntR family
*
Clostridium hiranonis DSM 13275

Site:
position = -94
score = 4.80579
sequence = TGTGTACTACACAGATAATACGCT

Site:
position = -242
score = 5.29158
sequence = GGTGTACTACCATTATAATACAGT

Site:
position = -40
score = 5.63723
sequence = AGTGTACCACATAAATAGTACACC

Gene: CLOHIR_00582: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
yhcG
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD1607: ABC-type multidrug transport system, ATPase component
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00581: ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component
yhcI
 
Clostridium bartlettii DSM 16795
 2
Clostridium difficile 630

Gene: CD1610: ABC-type multidrug transport system, permease component

Gene: CD1608: ABC-type multidrug transport system, permease component
 2
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00580: ABC-type multidrug transport system, permease component

Gene: CLOHIR_00578: ABC-type multidrug transport system, permease component
ABC-type multidrug transport system, permease component
CD1609
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD1609: hypothetical protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00579: hypothetical protein
hypothetical protein
CD1611
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD1611: hypothetical protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00577: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD