Regulog YdcR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia cepacia AMMD | 4 | 3 |
| Burkholderia glumae BGR1 | ||
| Burkholderia mallei ATCC 23344 | 2 | 1 |
| Burkholderia phymatum STM815 | 7 | 4 |
| Burkholderia pseudomallei K96243 | 3 | 2 |
| Burkholderia sp. 383 | 4 | 3 |
| Burkholderia vietnamiensis G4 | 3 | 2 |
| Burkholderia xenovorans LB400 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| PF11174 |
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Burkholderia cepacia AMMD Site: position = -94 score = 6.8525 sequence = CCGTGCTGCGCAAAA-(9)-AACTGCTTCTTTTTC Gene: Bamb_5419: Protein of unknown function DUF2970 |
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*
Burkholderia phymatum STM815 Site: position = -108 score = 7.75403 sequence = CGCTGCTGCGCTGGA-(9)-ATCTGCTTCTTACGC Gene: Bphy_3580: Protein of unknown function DUF2970 |
*
Burkholderia pseudomallei K96243 Site: position = -112 score = 8.74526 sequence = ATCTGCTGCGCGAAA-(9)-AACTGCTGCTTTCCT Gene: BPSL1320: Protein of unknown function DUF2970 |
*
Burkholderia sp. 383 Site: position = -94 score = 7.16662 sequence = GCCTGCTGCGCGAAA-(9)-AACTGCTTCTTTTTT Gene: Bcep18194_B2437: Protein of unknown function DUF2970 |
*
Burkholderia vietnamiensis G4 Site: position = -94 score = 6.21407 sequence = GCGTGCTGCGCTAAA-(9)-AACTGCTTCTTTTTC Gene: Bcep1808_4100: Protein of unknown function DUF2970 |
*
Burkholderia xenovorans LB400 Site: position = -103 score = 6.87914 sequence = GACTGCTACGTTCGA-(9)-AACTGCTACTTCTTT Gene: Bxe_B0923: Protein of unknown function DUF2970 |
Protein of unknown function DUF2970 |
| CRON 2. | |||||||||
| COG0823 |
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Burkholderia cepacia AMMD Site: position = -192 score = 8.76377 sequence = TGCTGATCCGCACGT-(10)-CTCTGATCCTTTTCT Gene: Bamb_4499: Periplasmic component of the Tol biopolymer transport system |
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*
Burkholderia sp. 383 Site: position = -201 score = 7.97003 sequence = CCGTGATCCGCTTGT-(10)-CTCTGATCCTGTTTT Gene: Bcep18194_B0569: Periplasmic component of the Tol biopolymer transport system |
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Periplasmic component of the Tol biopolymer transport system |
| CRON 3. | |||||||||
| COG4943 |
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*
Burkholderia phymatum STM815 Site: position = -158 score = 7.56714 sequence = ATCTGATACGGCGTT-(9)-ATCTGCTGCTATTGC Gene: Bphy_6903: Predicted signal transduction protein containing sensor and EAL domains |
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2
Burkholderia xenovorans LB400 Gene: Bxe_C1171: Predicted signal transduction protein containing sensor and EAL domains Gene: Bxe_B2099: Predicted signal transduction protein containing sensor and EAL domains |
Predicted signal transduction protein containing sensor and EAL domains |
| ydcR2 |
Gene: Bamb_4500: Transcriptional regulator, GntR family |
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Gene: Bphy_6902: Transcriptional regulator, GntR family |
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Gene: Bcep18194_B0568: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
| CRON 4. | |||||||||
| cysI |
*
Burkholderia cepacia AMMD Site: position = -143 score = 9.38037 sequence = ATCTGCTGCGCCCTT-(9)-ATCTGCTGCTTGTCC Gene: Bamb_3929: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
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*
Burkholderia mallei ATCC 23344 Site: position = -145 score = 9.43249 sequence = ATCTGCTGCGCAAAA-(9)-ATCTGCTGCTTGTTG Gene: BMA3052: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
*
Burkholderia phymatum STM815 Site: position = -170 score = 6.97852 sequence = ATCTGCTGCCGTCAT-(9)-ATCTGCGTCTTGCCG Gene: Bphy_5829: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
*
Burkholderia pseudomallei K96243 Site: position = -145 score = 9.43249 sequence = ATCTGCTGCGCAAAA-(9)-ATCTGCTGCTTGTTG Gene: BPSL1319: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
*
Burkholderia sp. 383 Site: position = -143 score = 9.38037 sequence = ATCTGCTGCGCCCTT-(9)-ATCTGCTGCTTGTCC Gene: Bcep18194_B1354: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
*
Burkholderia vietnamiensis G4 Site: position = -105 score = 7.42722 sequence = CACTGCTACGCTCGT-(9)-GTCTGCTGCTTTAAC Gene: Bcep1808_6068: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
*
Burkholderia xenovorans LB400 Site: position = -269 score = 7.25258 sequence = ATCTGCTACCGCGAT-(9)-ATCTGCTACTTTTCA Gene: Bxe_B0922: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) |
| COG3749 |
Gene: Bamb_3930: Oxidoreductase probably involved in sulfite reduction |
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Gene: BMA3053: Oxidoreductase probably involved in sulfite reduction |
Gene: Bphy_5828: Oxidoreductase probably involved in sulfite reduction |
Gene: BPSL1318: Oxidoreductase probably involved in sulfite reduction |
Gene: Bcep18194_B1353: Oxidoreductase probably involved in sulfite reduction |
Gene: Bcep1808_6067: Oxidoreductase probably involved in sulfite reduction |
Gene: Bxe_B0921: Oxidoreductase probably involved in sulfite reduction |
Oxidoreductase probably involved in sulfite reduction |
| CRON 5. | |||||||||
| Bphy_6906 |
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*
Burkholderia phymatum STM815 Site: position = -126 score = 8.63771 sequence = ATCTGATACGCATGT-(10)-AACTGCTACTCGTTT Gene: Bphy_6906: Rtn protein |
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Rtn protein |
| Bphy_6905 |
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Gene: Bphy_6905: diguanylate cyclase with PAS/PAC sensor |
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diguanylate cyclase with PAS/PAC sensor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |