Regulog YdcR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia cepacia AMMD	4	3
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344	2	1
Burkholderia phymatum STM815	7	4
Burkholderia pseudomallei K96243	3	2
Burkholderia sp. 383	4	3
Burkholderia vietnamiensis G4	3	2
Burkholderia xenovorans LB400	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF11174	* Burkholderia cepacia AMMD Site: position = -94 score = 6.8525 sequence = CCGTGCTGCGCAAAA-(9)-AACTGCTTCTTTTTC Gene: Bamb_5419: Protein of unknown function DUF2970	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -108 score = 7.75403 sequence = CGCTGCTGCGCTGGA-(9)-ATCTGCTTCTTACGC Gene: Bphy_3580: Protein of unknown function DUF2970	* Burkholderia pseudomallei K96243 Site: position = -112 score = 8.74526 sequence = ATCTGCTGCGCGAAA-(9)-AACTGCTGCTTTCCT Gene: BPSL1320: Protein of unknown function DUF2970	* Burkholderia sp. 383 Site: position = -94 score = 7.16662 sequence = GCCTGCTGCGCGAAA-(9)-AACTGCTTCTTTTTT Gene: Bcep18194_B2437: Protein of unknown function DUF2970	* Burkholderia vietnamiensis G4 Site: position = -94 score = 6.21407 sequence = GCGTGCTGCGCTAAA-(9)-AACTGCTTCTTTTTC Gene: Bcep1808_4100: Protein of unknown function DUF2970	* Burkholderia xenovorans LB400 Site: position = -103 score = 6.87914 sequence = GACTGCTACGTTCGA-(9)-AACTGCTACTTCTTT Gene: Bxe_B0923: Protein of unknown function DUF2970	Protein of unknown function DUF2970

CRON 2.
COG0823	* Burkholderia cepacia AMMD Site: position = -192 score = 8.76377 sequence = TGCTGATCCGCACGT-(10)-CTCTGATCCTTTTCT Gene: Bamb_4499: Periplasmic component of the Tol biopolymer transport system	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815	Burkholderia pseudomallei K96243	* Burkholderia sp. 383 Site: position = -201 score = 7.97003 sequence = CCGTGATCCGCTTGT-(10)-CTCTGATCCTGTTTT Gene: Bcep18194_B0569: Periplasmic component of the Tol biopolymer transport system	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Periplasmic component of the Tol biopolymer transport system

CRON 3.
COG4943	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -158 score = 7.56714 sequence = ATCTGATACGGCGTT-(9)-ATCTGCTGCTATTGC Gene: Bphy_6903: Predicted signal transduction protein containing sensor and EAL domains	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	2 Burkholderia xenovorans LB400 Gene: Bxe_C1171: Predicted signal transduction protein containing sensor and EAL domains Gene: Bxe_B2099: Predicted signal transduction protein containing sensor and EAL domains	Predicted signal transduction protein containing sensor and EAL domains
ydcR2	Burkholderia cepacia AMMD Gene: Bamb_4500: Transcriptional regulator, GntR family	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6902: Transcriptional regulator, GntR family	Burkholderia pseudomallei K96243	Burkholderia sp. 383 Gene: Bcep18194_B0568: Transcriptional regulator, GntR family	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Transcriptional regulator, GntR family

CRON 4.
cysI	* Burkholderia cepacia AMMD Site: position = -143 score = 9.38037 sequence = ATCTGCTGCGCCCTT-(9)-ATCTGCTGCTTGTCC Gene: Bamb_3929: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Burkholderia glumae BGR1	* Burkholderia mallei ATCC 23344 Site: position = -145 score = 9.43249 sequence = ATCTGCTGCGCAAAA-(9)-ATCTGCTGCTTGTTG Gene: BMA3052: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	* Burkholderia phymatum STM815 Site: position = -170 score = 6.97852 sequence = ATCTGCTGCCGTCAT-(9)-ATCTGCGTCTTGCCG Gene: Bphy_5829: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	* Burkholderia pseudomallei K96243 Site: position = -145 score = 9.43249 sequence = ATCTGCTGCGCAAAA-(9)-ATCTGCTGCTTGTTG Gene: BPSL1319: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	* Burkholderia sp. 383 Site: position = -143 score = 9.38037 sequence = ATCTGCTGCGCCCTT-(9)-ATCTGCTGCTTGTCC Gene: Bcep18194_B1354: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	* Burkholderia vietnamiensis G4 Site: position = -105 score = 7.42722 sequence = CACTGCTACGCTCGT-(9)-GTCTGCTGCTTTAAC Gene: Bcep1808_6068: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	* Burkholderia xenovorans LB400 Site: position = -269 score = 7.25258 sequence = ATCTGCTACCGCGAT-(9)-ATCTGCTACTTTTCA Gene: Bxe_B0922: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)
COG3749	Burkholderia cepacia AMMD Gene: Bamb_3930: Oxidoreductase probably involved in sulfite reduction	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344 Gene: BMA3053: Oxidoreductase probably involved in sulfite reduction	Burkholderia phymatum STM815 Gene: Bphy_5828: Oxidoreductase probably involved in sulfite reduction	Burkholderia pseudomallei K96243 Gene: BPSL1318: Oxidoreductase probably involved in sulfite reduction	Burkholderia sp. 383 Gene: Bcep18194_B1353: Oxidoreductase probably involved in sulfite reduction	Burkholderia vietnamiensis G4 Gene: Bcep1808_6067: Oxidoreductase probably involved in sulfite reduction	Burkholderia xenovorans LB400 Gene: Bxe_B0921: Oxidoreductase probably involved in sulfite reduction	Oxidoreductase probably involved in sulfite reduction

CRON 5.
Bphy_6906	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	* Burkholderia phymatum STM815 Site: position = -126 score = 8.63771 sequence = ATCTGATACGCATGT-(10)-AACTGCTACTCGTTT Gene: Bphy_6906: Rtn protein	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	Rtn protein
Bphy_6905	Burkholderia cepacia AMMD	Burkholderia glumae BGR1	Burkholderia mallei ATCC 23344	Burkholderia phymatum STM815 Gene: Bphy_6905: diguanylate cyclase with PAS/PAC sensor	Burkholderia pseudomallei K96243	Burkholderia sp. 383	Burkholderia vietnamiensis G4	Burkholderia xenovorans LB400	diguanylate cyclase with PAS/PAC sensor

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YdcR - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --