Regulog SO2282 - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Metabolite transport
Effector:
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 52 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - GntR/MocR
By pathway - Metabolite transport

Statistics of regulated genes
Genome	Genes	Operons
Shewanella amazonensis SB2B	3	3
Shewanella baltica OS155	3	3
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4	2	2
Shewanella loihica PV-4
Shewanella oneidensis MR-1	2	2
Shewanella pealeana ATCC 700345	2	2
Shewanella piezotolerans WP3	2	2
Shewanella putrefaciens CN-32	2	2
Shewanella sediminis HAW-EB3
Shewanella sp ANA-3	3	3
Shewanella sp MR-4	3	3
Shewanella sp MR-7	3	3
Shewanella sp W3-18-1	2	2
Shewanella woodyi ATCC 51908	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
PF01810	* Shewanella amazonensis SB2B Site: position = -111 score = 7.96834 sequence = AATTGTACG-(1)-ATGACAATA Site: position = -31 score = 8.39493 sequence = TATTGTATC-(0)-CATACAATT Gene: Sama_2015: Transporter, LysE family	* Shewanella baltica OS155 Site: position = -68 score = 7.68028 sequence = GATTGTACT-(1)-ATGACAATA Site: position = 8 score = 7.58727 sequence = AAATGTATG-(0)-CATACAATT Gene: Sbal_2382: Transporter, LysE family	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella halifaxensis HAW-EB4 Site: position = -94 score = 7.60332 sequence = TTTTGTATG-(0)-CATACAATT Site: position = -173 score = 7.82704 sequence = GATTGTACC-(1)-ATGACAATA Gene: Shal_1727: Transporter, LysE family	Shewanella loihica PV-4	Shewanella oneidensis MR-1 Gene: SO2285: Transporter, LysE family	* Shewanella pealeana ATCC 700345 Site: position = -97 score = 8.14999 sequence = TATTGTACT-(0)-CATACAATT Site: position = -176 score = 7.74192 sequence = AATTGTACC-(1)-ATAACAATA Gene: Spea_2526: Transporter, LysE family	* Shewanella piezotolerans WP3 Site: position = -145 score = 8.14999 sequence = AATTGTATG-(0)-CGTACAATA Site: position = -224 score = 8.1151 sequence = AATTGTACC-(1)-ATGACAATA Gene: swp_1879: Transporter, LysE family	* Shewanella putrefaciens CN-32 Site: position = -104 score = 7.59515 sequence = AATTGTACT-(1)-ATAACAATA Site: position = -28 score = 6.99555 sequence = CAATGTATG-(0)-CATACAATT Gene: Sputcn32_2133: Transporter, LysE family	Shewanella sediminis HAW-EB3	* Shewanella sp ANA-3 Site: position = -104 score = 8.1151 sequence = AATTGTACC-(1)-ATGACAATA Site: position = -28 score = 8.14999 sequence = TATTGTATG-(0)-CGTACAATT Gene: Shewana3_2265: Transporter, LysE family	* Shewanella sp MR-4 Site: position = -103 score = 8.1151 sequence = AATTGTACC-(1)-ATGACAATA Site: position = -28 score = 8.14999 sequence = TATTGTATG-(0)-CGTACAATT Gene: Shewmr4_1754: Transporter, LysE family	* Shewanella sp MR-7 Site: position = -28 score = 8.14999 sequence = TATTGTATG-(0)-CGTACAATT Site: position = -104 score = 8.1151 sequence = AATTGTACC-(1)-ATGACAATA Gene: Shewmr7_1834: Transporter, LysE family	* Shewanella sp W3-18-1 Site: position = -28 score = 6.99555 sequence = CAATGTATG-(0)-CATACAATT Site: position = -104 score = 7.74192 sequence = AATTGTACC-(1)-ATAACAATA Gene: Sputw3181_1878: Transporter, LysE family	* Shewanella woodyi ATCC 51908 Site: position = -55 score = 7.71579 sequence = TATTGTATG-(0)-TGTACAATT Site: position = -133 score = 7.74192 sequence = AATTGTACC-(1)-ATAACAATA Gene: Swoo_1967: Transporter, LysE family	Transporter, LysE family

CRON 2.
PF07690	* Shewanella amazonensis SB2B Site: position = -152 score = 6.09447 sequence = CATTGTGAG-(0)-GCAACAATT Gene: Sama_2017: Drug resistance transporter, Bcr/CflA subfamily	* Shewanella baltica OS155 Site: position = -79 score = 7.59868 sequence = AATTGTTCT-(0)-AGTACAATT Gene: Sbal_2385: Drug resistance transporter, Bcr/CflA subfamily	Shewanella denitrificans OS217 Gene: Sden_2043: Drug resistance transporter, Bcr/CflA subfamily	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1629: Drug resistance transporter, Bcr/CflA subfamily	Shewanella halifaxensis HAW-EB4 Gene: Shal_2386: Drug resistance transporter, Bcr/CflA subfamily	Shewanella loihica PV-4 Gene: Shew_1777: Drug resistance transporter, Bcr/CflA subfamily	* Shewanella oneidensis MR-1 Site: position = -75 score = 7.22719 sequence = AATTGTTAC-(0)-CCTACAATT Gene: SO2280: Drug resistance transporter, Bcr/CflA subfamily	Shewanella pealeana ATCC 700345 Gene: Spea_1912: Drug resistance transporter, Bcr/CflA subfamily	Shewanella piezotolerans WP3 Gene: swp_2841: Drug resistance transporter, Bcr/CflA subfamily	Shewanella putrefaciens CN-32 Gene: Sputcn32_2136: Drug resistance transporter, Bcr/CflA subfamily	2 Shewanella sediminis HAW-EB3 Gene: Ssed_1316: Drug resistance transporter, Bcr/CflA subfamily Gene: Ssed_2665: Drug resistance transporter, Bcr/CflA subfamily	* Shewanella sp ANA-3 Site: position = -75 score = 7.22719 sequence = AATTGTTAC-(0)-CCTACAATT Gene: Shewana3_2268: Drug resistance transporter, Bcr/CflA subfamily	* Shewanella sp MR-4 Site: position = -75 score = 7.22719 sequence = AATTGTTAC-(0)-CCTACAATT Gene: Shewmr4_1751: Drug resistance transporter, Bcr/CflA subfamily	* Shewanella sp MR-7 Site: position = -75 score = 7.7682 sequence = AATTGTAAC-(0)-CCTACAATT Gene: Shewmr7_1831: Drug resistance transporter, Bcr/CflA subfamily	Shewanella sp W3-18-1 Gene: Sputw3181_1875: Drug resistance transporter, Bcr/CflA subfamily	Shewanella woodyi ATCC 51908 Gene: Swoo_1956: Drug resistance transporter, Bcr/CflA subfamily	Drug resistance transporter, Bcr/CflA subfamily

CRON 3.
SO2282	* Shewanella amazonensis SB2B Site: position = -86 score = 8.39493 sequence = AATTGTATG-(0)-GATACAATA Site: position = -7 score = 7.96834 sequence = TATTGTCAT-(1)-CGTACAATT Gene: Sama_2016: Transcriptional regulator, GntR family	* Shewanella baltica OS155 Site: position = -82 score = 7.58727 sequence = AATTGTATG-(0)-CATACATTT Site: position = -7 score = 7.68028 sequence = TATTGTCAT-(1)-AGTACAATC Gene: Sbal_2383: Transcriptional regulator, GntR family	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella halifaxensis HAW-EB4 Site: position = -85 score = 7.60332 sequence = AATTGTATG-(0)-CATACAAAA Site: position = -7 score = 7.82704 sequence = TATTGTCAT-(1)-GGTACAATC Gene: Shal_1726: Transcriptional regulator, GntR family	Shewanella loihica PV-4	* Shewanella oneidensis MR-1 Site: position = -7 score = 8.1151 sequence = TATTGTCAT-(1)-GGTACAATT Site: position = -82 score = 8.14999 sequence = TATTGTACG-(0)-CATACAATT Gene: SO2282: Transcriptional regulator, GntR family	* Shewanella pealeana ATCC 700345 Site: position = -85 score = 8.14999 sequence = AATTGTATG-(0)-AGTACAATA Site: position = -7 score = 7.74192 sequence = TATTGTTAT-(1)-GGTACAATT Gene: Spea_2527: Transcriptional regulator, GntR family	* Shewanella piezotolerans WP3 Site: position = 59 score = 8.1151 sequence = TATTGTCAT-(1)-GGTACAATT Site: position = -19 score = 8.14999 sequence = TATTGTACG-(0)-CATACAATT Gene: swp_1877: Transcriptional regulator, GntR family	* Shewanella putrefaciens CN-32 Site: position = -7 score = 7.59515 sequence = TATTGTTAT-(1)-AGTACAATT Site: position = -82 score = 6.99555 sequence = AATTGTATG-(0)-CATACATTG Gene: Sputcn32_2134: Transcriptional regulator, GntR family	Shewanella sediminis HAW-EB3	* Shewanella sp ANA-3 Site: position = 17 score = 8.1151 sequence = TATTGTCAT-(1)-GGTACAATT Site: position = -58 score = 8.14999 sequence = AATTGTACG-(0)-CATACAATA Gene: Shewana3_2266: Transcriptional regulator, GntR family	* Shewanella sp MR-4 Site: position = -7 score = 8.1151 sequence = TATTGTCAT-(1)-GGTACAATT Site: position = -81 score = 8.14999 sequence = AATTGTACG-(0)-CATACAATA Gene: Shewmr4_1753: Transcriptional regulator, GntR family	* Shewanella sp MR-7 Site: position = -7 score = 8.1151 sequence = TATTGTCAT-(1)-GGTACAATT Site: position = -82 score = 8.14999 sequence = AATTGTACG-(0)-CATACAATA Gene: Shewmr7_1833: Transcriptional regulator, GntR family	* Shewanella sp W3-18-1 Site: position = -97 score = 6.99555 sequence = AATTGTATG-(0)-CATACATTG Site: position = -22 score = 7.74192 sequence = TATTGTTAT-(1)-GGTACAATT Gene: Sputw3181_1877: Transcriptional regulator, GntR family	* Shewanella woodyi ATCC 51908 Site: position = -84 score = 7.71579 sequence = AATTGTACA-(0)-CATACAATA Site: position = -7 score = 7.74192 sequence = TATTGTTAT-(1)-GGTACAATT Gene: Swoo_1966: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SO2282 - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --