Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SO2282 - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella amazonensis SB2B 3 3
Shewanella baltica OS155 3 3
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4 2 2
Shewanella loihica PV-4
Shewanella oneidensis MR-1 2 2
Shewanella pealeana ATCC 700345 2 2
Shewanella piezotolerans WP3 2 2
Shewanella putrefaciens CN-32 2 2
Shewanella sediminis HAW-EB3
Shewanella sp ANA-3 3 3
Shewanella sp MR-4 3 3
Shewanella sp MR-7 3 3
Shewanella sp W3-18-1 2 2
Shewanella woodyi ATCC 51908 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
*
Shewanella amazonensis SB2B

Site:
position = -111
score = 7.96834
sequence = AATTGTACG-(1)-ATGACAATA

Site:
position = -31
score = 8.39493
sequence = TATTGTATC-(0)-CATACAATT

Gene: Sama_2015: Transporter, LysE family
*
Shewanella baltica OS155

Site:
position = -68
score = 7.68028
sequence = GATTGTACT-(1)-ATGACAATA

Site:
position = 8
score = 7.58727
sequence = AAATGTATG-(0)-CATACAATT

Gene: Sbal_2382: Transporter, LysE family
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella halifaxensis HAW-EB4

Site:
position = -94
score = 7.60332
sequence = TTTTGTATG-(0)-CATACAATT

Site:
position = -173
score = 7.82704
sequence = GATTGTACC-(1)-ATGACAATA

Gene: Shal_1727: Transporter, LysE family
 
Shewanella loihica PV-4
 
Shewanella oneidensis MR-1

Gene: SO2285: Transporter, LysE family
*
Shewanella pealeana ATCC 700345

Site:
position = -97
score = 8.14999
sequence = TATTGTACT-(0)-CATACAATT

Site:
position = -176
score = 7.74192
sequence = AATTGTACC-(1)-ATAACAATA

Gene: Spea_2526: Transporter, LysE family
*
Shewanella piezotolerans WP3

Site:
position = -145
score = 8.14999
sequence = AATTGTATG-(0)-CGTACAATA

Site:
position = -224
score = 8.1151
sequence = AATTGTACC-(1)-ATGACAATA

Gene: swp_1879: Transporter, LysE family
*
Shewanella putrefaciens CN-32

Site:
position = -104
score = 7.59515
sequence = AATTGTACT-(1)-ATAACAATA

Site:
position = -28
score = 6.99555
sequence = CAATGTATG-(0)-CATACAATT

Gene: Sputcn32_2133: Transporter, LysE family
 
Shewanella sediminis HAW-EB3
*
Shewanella sp ANA-3

Site:
position = -104
score = 8.1151
sequence = AATTGTACC-(1)-ATGACAATA

Site:
position = -28
score = 8.14999
sequence = TATTGTATG-(0)-CGTACAATT

Gene: Shewana3_2265: Transporter, LysE family
*
Shewanella sp MR-4

Site:
position = -103
score = 8.1151
sequence = AATTGTACC-(1)-ATGACAATA

Site:
position = -28
score = 8.14999
sequence = TATTGTATG-(0)-CGTACAATT

Gene: Shewmr4_1754: Transporter, LysE family
*
Shewanella sp MR-7

Site:
position = -28
score = 8.14999
sequence = TATTGTATG-(0)-CGTACAATT

Site:
position = -104
score = 8.1151
sequence = AATTGTACC-(1)-ATGACAATA

Gene: Shewmr7_1834: Transporter, LysE family
*
Shewanella sp W3-18-1

Site:
position = -28
score = 6.99555
sequence = CAATGTATG-(0)-CATACAATT

Site:
position = -104
score = 7.74192
sequence = AATTGTACC-(1)-ATAACAATA

Gene: Sputw3181_1878: Transporter, LysE family
*
Shewanella woodyi ATCC 51908

Site:
position = -55
score = 7.71579
sequence = TATTGTATG-(0)-TGTACAATT

Site:
position = -133
score = 7.74192
sequence = AATTGTACC-(1)-ATAACAATA

Gene: Swoo_1967: Transporter, LysE family
Transporter, LysE family
 
CRON 2.
PF07690
*
Shewanella amazonensis SB2B

Site:
position = -152
score = 6.09447
sequence = CATTGTGAG-(0)-GCAACAATT

Gene: Sama_2017: Drug resistance transporter, Bcr/CflA subfamily
*
Shewanella baltica OS155

Site:
position = -79
score = 7.59868
sequence = AATTGTTCT-(0)-AGTACAATT

Gene: Sbal_2385: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella denitrificans OS217

Gene: Sden_2043: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1629: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2386: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella loihica PV-4

Gene: Shew_1777: Drug resistance transporter, Bcr/CflA subfamily
*
Shewanella oneidensis MR-1

Site:
position = -75
score = 7.22719
sequence = AATTGTTAC-(0)-CCTACAATT

Gene: SO2280: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella pealeana ATCC 700345

Gene: Spea_1912: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella piezotolerans WP3

Gene: swp_2841: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2136: Drug resistance transporter, Bcr/CflA subfamily
 2
Shewanella sediminis HAW-EB3

Gene: Ssed_1316: Drug resistance transporter, Bcr/CflA subfamily

Gene: Ssed_2665: Drug resistance transporter, Bcr/CflA subfamily
*
Shewanella sp ANA-3

Site:
position = -75
score = 7.22719
sequence = AATTGTTAC-(0)-CCTACAATT

Gene: Shewana3_2268: Drug resistance transporter, Bcr/CflA subfamily
*
Shewanella sp MR-4

Site:
position = -75
score = 7.22719
sequence = AATTGTTAC-(0)-CCTACAATT

Gene: Shewmr4_1751: Drug resistance transporter, Bcr/CflA subfamily
*
Shewanella sp MR-7

Site:
position = -75
score = 7.7682
sequence = AATTGTAAC-(0)-CCTACAATT

Gene: Shewmr7_1831: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella sp W3-18-1

Gene: Sputw3181_1875: Drug resistance transporter, Bcr/CflA subfamily
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1956: Drug resistance transporter, Bcr/CflA subfamily
Drug resistance transporter, Bcr/CflA subfamily
 
CRON 3.
SO2282
*
Shewanella amazonensis SB2B

Site:
position = -86
score = 8.39493
sequence = AATTGTATG-(0)-GATACAATA

Site:
position = -7
score = 7.96834
sequence = TATTGTCAT-(1)-CGTACAATT

Gene: Sama_2016: Transcriptional regulator, GntR family
*
Shewanella baltica OS155

Site:
position = -82
score = 7.58727
sequence = AATTGTATG-(0)-CATACATTT

Site:
position = -7
score = 7.68028
sequence = TATTGTCAT-(1)-AGTACAATC

Gene: Sbal_2383: Transcriptional regulator, GntR family
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
*
Shewanella halifaxensis HAW-EB4

Site:
position = -85
score = 7.60332
sequence = AATTGTATG-(0)-CATACAAAA

Site:
position = -7
score = 7.82704
sequence = TATTGTCAT-(1)-GGTACAATC

Gene: Shal_1726: Transcriptional regulator, GntR family
 
Shewanella loihica PV-4
*
Shewanella oneidensis MR-1

Site:
position = -7
score = 8.1151
sequence = TATTGTCAT-(1)-GGTACAATT

Site:
position = -82
score = 8.14999
sequence = TATTGTACG-(0)-CATACAATT

Gene: SO2282: Transcriptional regulator, GntR family
*
Shewanella pealeana ATCC 700345

Site:
position = -85
score = 8.14999
sequence = AATTGTATG-(0)-AGTACAATA

Site:
position = -7
score = 7.74192
sequence = TATTGTTAT-(1)-GGTACAATT

Gene: Spea_2527: Transcriptional regulator, GntR family
*
Shewanella piezotolerans WP3

Site:
position = 59
score = 8.1151
sequence = TATTGTCAT-(1)-GGTACAATT

Site:
position = -19
score = 8.14999
sequence = TATTGTACG-(0)-CATACAATT

Gene: swp_1877: Transcriptional regulator, GntR family
*
Shewanella putrefaciens CN-32

Site:
position = -7
score = 7.59515
sequence = TATTGTTAT-(1)-AGTACAATT

Site:
position = -82
score = 6.99555
sequence = AATTGTATG-(0)-CATACATTG

Gene: Sputcn32_2134: Transcriptional regulator, GntR family
 
Shewanella sediminis HAW-EB3
*
Shewanella sp ANA-3

Site:
position = 17
score = 8.1151
sequence = TATTGTCAT-(1)-GGTACAATT

Site:
position = -58
score = 8.14999
sequence = AATTGTACG-(0)-CATACAATA

Gene: Shewana3_2266: Transcriptional regulator, GntR family
*
Shewanella sp MR-4

Site:
position = -7
score = 8.1151
sequence = TATTGTCAT-(1)-GGTACAATT

Site:
position = -81
score = 8.14999
sequence = AATTGTACG-(0)-CATACAATA

Gene: Shewmr4_1753: Transcriptional regulator, GntR family
*
Shewanella sp MR-7

Site:
position = -7
score = 8.1151
sequence = TATTGTCAT-(1)-GGTACAATT

Site:
position = -82
score = 8.14999
sequence = AATTGTACG-(0)-CATACAATA

Gene: Shewmr7_1833: Transcriptional regulator, GntR family
*
Shewanella sp W3-18-1

Site:
position = -97
score = 6.99555
sequence = AATTGTATG-(0)-CATACATTG

Site:
position = -22
score = 7.74192
sequence = TATTGTTAT-(1)-GGTACAATT

Gene: Sputw3181_1877: Transcriptional regulator, GntR family
*
Shewanella woodyi ATCC 51908

Site:
position = -84
score = 7.71579
sequence = AATTGTACA-(0)-CATACAATA

Site:
position = -7
score = 7.74192
sequence = TATTGTTAT-(1)-GGTACAATT

Gene: Swoo_1966: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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