Regulog LexA - Streptomycetaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Streptomycetaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces avermitilis MA-4680 | 8 | 6 |
| Streptomyces coelicolor A3(2) | 10 | 8 |
| Streptomyces griseus subsp. griseus NBRC 13350 | 6 | 5 |
| Streptomyces scabiei 87.22 | 7 | 5 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| uvrA |
*
Streptomyces avermitilis MA-4680 Site: position = -166 score = 4.81317 sequence = TCGAATGCGCGTGCTA Gene: SAV_6286: Excinuclease ABC, subunit A |
*
Streptomyces coelicolor A3(2) Site: position = -164 score = 4.75442 sequence = TCGAATGCACGTGCTA Gene: SCO1958: Excinuclease ABC, subunit A |
*2
Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_704: Excinuclease ABC, subunit A Site: position = -117 score = 4.75442 sequence = TCGAATGTGCGTGCTA Gene: SGR_5564: Excinuclease ABC, subunit A |
*
Streptomyces scabiei 87.22 Site: position = -166 score = 4.75442 sequence = TCGAATGCACGTGCTA Gene: SCAB_69561: Excinuclease ABC, subunit A |
Excinuclease ABC, subunit A |
| CRON 2. | |||||
| gyrB |
*
Streptomyces avermitilis MA-4680 Site: position = -151 score = 4.66519 sequence = TCGAACGCTCGTACGA Gene: SAV_2442: Topoisomerase IV, subunit B (EC 5.99.1.-) |
*
Streptomyces coelicolor A3(2) Site: position = -152 score = 4.85869 sequence = TCGAACAGGCATGCGA Gene: SCO5822: Topoisomerase IV, subunit B (EC 5.99.1.-) |
*2
Streptomyces griseus subsp. griseus NBRC 13350 Gene: SGR_908: Topoisomerase IV, subunit B (EC 5.99.1.-) Site: position = -163 score = 4.79995 sequence = TCGAACATCCATGCGA Gene: SGR_1698: Topoisomerase IV, subunit B (EC 5.99.1.-) |
*
Streptomyces scabiei 87.22 Site: position = -153 score = 5.11227 sequence = TCGAACGCGTATGCGA Gene: SCAB_24391: Topoisomerase IV, subunit B (EC 5.99.1.-) |
Topoisomerase IV, subunit B (EC 5.99.1.-) |
| CRON 3. | |||||
| lexA |
*
Streptomyces avermitilis MA-4680 Site: position = -75 score = 4.78391 sequence = TCGAACGTGTGTTTGG Gene: SAV_2463: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Streptomyces coelicolor A3(2) Site: position = -150 score = 4.78391 sequence = TCGAACGTGTGTTTGG Gene: SCO5803: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -77 score = 4.78391 sequence = TCGAACGTGTGTTTGG Gene: SGR_1717: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Streptomyces scabiei 87.22 Site: position = -76 score = 4.78391 sequence = TCGAACGTGTGTTTGG Gene: SCAB_24651: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 4. | |||||
| dnaE2 |
*
Streptomyces avermitilis MA-4680 Site: position = -106 score = 3.9318 sequence = TCGTACAGCAGTTCGA Site: position = -62 score = 4.60268 sequence = TTGAACAGATGTTCGA Gene: SAV_6555: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Streptomyces coelicolor A3(2) Site: position = -116 score = 5.05353 sequence = TCGCACACACATTCGA Site: position = -72 score = 3.86015 sequence = GGGAACAGACGTTCGA Gene: SCO1739: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: SGR_6691: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Streptomyces scabiei 87.22 Site: position = -114 score = 4.12663 sequence = TCGTACAGAAGTTCGA Gene: SCAB_72281: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| dinP |
Gene: SAV_6556: DNA polymerase IV (EC 2.7.7.7) |
*3
Streptomyces coelicolor A3(2) Site: position = -27 score = 4.44117 sequence = TCGAATTCCTGTTCGA Gene: SCP1.321 (deprecated): DNA polymerase IV (EC 2.7.7.7) Gene: SCO1738: DNA polymerase IV (EC 2.7.7.7) Site: position = -27 score = 4.44117 sequence = TCGAATTCCTGTTCGA Gene: SCP1.33c (deprecated): DNA polymerase IV (EC 2.7.7.7) |
Gene: SGR_6692: DNA polymerase IV (EC 2.7.7.7) |
Gene: SCAB_72291: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 5. | |||||
| alkB |
*
Streptomyces avermitilis MA-4680 Site: position = -37 score = 4.12499 sequence = TAGAACAGATCTTCGA Gene: SAV_1131: DNA repair system specific for alkylated DNA |
*
Streptomyces coelicolor A3(2) Site: position = -36 score = 4.17568 sequence = TAGAACAGACTTTCGA Gene: SCO7302: DNA repair system specific for alkylated DNA |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -35 score = 4.68379 sequence = TCGCACACATGCTCGA Gene: SGR_1536: DNA repair system specific for alkylated DNA |
Gene: SCAB_85711: DNA repair system specific for alkylated DNA |
DNA repair system specific for alkylated DNA |
| CRON 6. | |||||
| recA |
*
Streptomyces avermitilis MA-4680 Site: position = -178 score = 3.96004 sequence = TCGAACATCCATTCTT Gene: SAV_2492: Recombinase A |
*
Streptomyces coelicolor A3(2) Site: position = -178 score = 3.96004 sequence = TCGAACATCCATTCTT Gene: SCO5769: Recombinase A |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -154 score = 4.29513 sequence = TCGAACATCCATTCTG Gene: SGR_1745: Recombinase A |
*
Streptomyces scabiei 87.22 Site: position = -178 score = 3.96004 sequence = TCGAACATCCATTCTT Gene: SCAB_24951: Recombinase A |
Recombinase A |
| recX |
Gene: SAV_2491: Regulatory protein RecX |
Gene: SCO5770: Regulatory protein RecX |
Gene: SGR_1744: Regulatory protein RecX |
Gene: SCAB_24941: Regulatory protein RecX |
Regulatory protein RecX |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |