Regulog BirA - Deinococcus-Thermus
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Deinococcus-Thermus |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - BirA
- By taxonomy - Deinococcus-Thermus
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus deserti VCD115 | ||
| Deinococcus geothermalis DSM 11300 | ||
| Deinococcus radiodurans R1 | ||
| Thermus aquaticus Y51MC23 | 1 | 1 |
| Thermus thermophilus HB27 | 2 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| bioB |
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Thermus thermophilus HB27 Site: position = -35 score = 9.24497 sequence = TCGTAAACT-(15)-GGTTTACGA Gene: TTC0242: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| CRON 2. | ||||||
| bioY |
Gene: Deide_19460: Substrate-specific component BioY of biotin ECF transporter |
Gene: Dgeo_2139: Substrate-specific component BioY of biotin ECF transporter |
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Thermus aquaticus Y51MC23 Site: position = -61 score = 9.39662 sequence = CCGTCAACC-(15)-GGTTGACGA Gene: TaqDRAFT_5371: Substrate-specific component BioY of biotin ECF transporter |
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Thermus thermophilus HB27 Site: position = -97 score = 9.39662 sequence = ACGTCAACC-(15)-GGTTGACGA Gene: TTC0548: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |