Regulog NikR - Chlorobiales

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Chlorobiales
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By trascription factor - NikR
By taxonomy - Chlorobiales
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Chlorobaculum parvum NCIB 8327	4	1
Chlorobium chlorochromatii CaD3
Chlorobium ferrooxidans DSM 13031	4	1
Chlorobium limicola DSM 245	4	1
Chlorobium phaeobacteroides BS1	6	1
Chlorobium phaeobacteroides DSM 266	4	1
Chloroherpeton thalassium ATCC 35110
Pelodictyon luteolum DSM 273
Pelodictyon phaeoclathratiforme BU-1
Prosthecochloris aestuarii DSM 271
Prosthecochloris vibrioformis DSM 265

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
nikR	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0467: Nickel responsive regulator NikR, CopG family	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_0978: Nickel responsive regulator NikR, CopG family	Chlorobium limicola DSM 245 Gene: Clim_2003: Nickel responsive regulator NikR, CopG family	* Chlorobium phaeobacteroides BS1 Site: position = -93 score = 8.03827 sequence = GTAGCAC-(13)-GTGCTAC Gene: Cphamn1_1135: Nickel responsive regulator NikR, CopG family	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0488: Nickel responsive regulator NikR, CopG family	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271 Gene: Paes_1344: Nickel responsive regulator NikR, CopG family	Prosthecochloris vibrioformis DSM 265	Nickel responsive regulator NikR, CopG family
nikK	Chlorobaculum parvum NCIB 8327	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031	Chlorobium limicola DSM 245	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1134: Additional periplasmic component NikK of nickel ECF transporter	Chlorobium phaeobacteroides DSM 266	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271 Gene: Paes_1345: Additional periplasmic component NikK of nickel ECF transporter	Prosthecochloris vibrioformis DSM 265	Additional periplasmic component NikK of nickel ECF transporter
nikM	Chlorobaculum parvum NCIB 8327	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031	Chlorobium limicola DSM 245	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1133: Substrate-specific component NikM of nickel ECF transporter	Chlorobium phaeobacteroides DSM 266	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271 Gene: Paes_1346: Substrate-specific component NikM of nickel ECF transporter	Prosthecochloris vibrioformis DSM 265	Substrate-specific component NikM of nickel ECF transporter
nikN	Chlorobaculum parvum NCIB 8327	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031	Chlorobium limicola DSM 245	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1132: Additional substrate-specific component NikN of nickel ECF transporter	Chlorobium phaeobacteroides DSM 266	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271 Gene: Paes_1347: Additional substrate-specific component NikN of nickel ECF transporter	Prosthecochloris vibrioformis DSM 265	Additional substrate-specific component NikN of nickel ECF transporter
nikQ	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0464: Transmembrane component NikQ of energizing module of nickel ECF transporter	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_0981: Transmembrane component NikQ of energizing module of nickel ECF transporter	Chlorobium limicola DSM 245 Gene: Clim_2006: Transmembrane component NikQ of energizing module of nickel ECF transporter	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1131: Transmembrane component NikQ of energizing module of nickel ECF transporter	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0485: Transmembrane component NikQ of energizing module of nickel ECF transporter	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_0491: Transmembrane component NikQ of energizing module of nickel ECF transporter	Prosthecochloris aestuarii DSM 271 Gene: Paes_1348: Transmembrane component NikQ of energizing module of nickel ECF transporter	Prosthecochloris vibrioformis DSM 265	Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0463: ATPase component NikO of energizing module of nickel ECF transporter	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_0982: ATPase component NikO of energizing module of nickel ECF transporter	Chlorobium limicola DSM 245 Gene: Clim_2007: ATPase component NikO of energizing module of nickel ECF transporter	Chlorobium phaeobacteroides BS1 Gene: Cphamn1_1130: ATPase component NikO of energizing module of nickel ECF transporter	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0484: ATPase component NikO of energizing module of nickel ECF transporter	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_0490: ATPase component NikO of energizing module of nickel ECF transporter	Prosthecochloris aestuarii DSM 271 Gene: Paes_1349: ATPase component NikO of energizing module of nickel ECF transporter	Prosthecochloris vibrioformis DSM 265	ATPase component NikO of energizing module of nickel ECF transporter
ompN	* Chlorobaculum parvum NCIB 8327 Site: position = -20 score = 7.52147 sequence = ATAGCAC-(13)-ATGCTAT Gene: Cpar_0466: Hypothetical outer membrane porin, nickel regulated	Chlorobium chlorochromatii CaD3	* Chlorobium ferrooxidans DSM 13031 Site: position = -75 score = 7.81919 sequence = GTAACAC-(13)-GTGCTAT Gene: CferDRAFT_0979: Hypothetical outer membrane porin, nickel regulated	* Chlorobium limicola DSM 245 Site: position = -54 score = 7.76835 sequence = GTAACAC-(13)-GTGCTAC Gene: Clim_2004: Hypothetical outer membrane porin, nickel regulated	Chlorobium phaeobacteroides BS1	* Chlorobium phaeobacteroides DSM 266 Site: position = -62 score = 8.13995 sequence = ATAGCAC-(13)-GTGCTAT Gene: Cpha266_0487: Hypothetical outer membrane porin, nickel regulated	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1	Prosthecochloris aestuarii DSM 271	Prosthecochloris vibrioformis DSM 265	Hypothetical outer membrane porin, nickel regulated
nikMN	Chlorobaculum parvum NCIB 8327 Gene: Cpar_0465: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter	Chlorobium chlorochromatii CaD3	Chlorobium ferrooxidans DSM 13031 Gene: CferDRAFT_0980: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter	Chlorobium limicola DSM 245 Gene: Clim_2005: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter	Chlorobium phaeobacteroides BS1	Chlorobium phaeobacteroides DSM 266 Gene: Cpha266_0486: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter	Chloroherpeton thalassium ATCC 35110	Pelodictyon luteolum DSM 273	Pelodictyon phaeoclathratiforme BU-1 Gene: Ppha_0492: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter	Prosthecochloris aestuarii DSM 271	Prosthecochloris vibrioformis DSM 265	Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Chlorobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --