Regulog MetR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | ||
| Thauera sp. MZ1T | ||
| Dechloromonas aromatica RCB | ||
| Nitrosomonas europaea ATCC 19718 | 2 | 2 |
| Nitrosospira multiformis ATCC 25196 | 2 | 2 |
| Thiobacillus denitrificans | 2 | 2 |
| Chromobacterium violaceum ATCC 12472 | 2 | 2 |
| Neisseria meningitidis MC58 | 3 | 2 |
| Laribacter hongkongensis HLHK9 | 2 | 2 |
| Methylobacillus flagellatus KT | 2 | 2 |
| Methylotenera mobilis JLW8 | 2 | 2 |
| Methylophilales bacterium HTCC2181 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| metR |
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Nitrosomonas europaea ATCC 19718 Site: position = -17 score = 5.35694 sequence = ATGAATAATTTTCAT Gene: NE1435: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Nitrosospira multiformis ATCC 25196 Site: position = -31 score = 5.8124 sequence = ATGAATAAAATTCAT Gene: Nmul_A2635: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Thiobacillus denitrificans Site: position = -23 score = 5.19237 sequence = ATGAATAACACTCAT Gene: Tbd_2285: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Chromobacterium violaceum ATCC 12472 Site: position = -47 score = 4.77053 sequence = ATGATTCAAACTCAT Gene: CV3603: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Neisseria meningitidis MC58 Site: position = -47 score = 4.90149 sequence = ATGAATTATTTTAAT Gene: NMB2055: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Laribacter hongkongensis HLHK9 Site: position = 10 score = 4.2641 sequence = ATGGTTTTATTTCAT Site: position = 31 score = 5.8124 sequence = ATGAATTTTATTCAT Gene: LHK_00468: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Methylobacillus flagellatus KT Site: position = -19 score = 5.8124 sequence = ATGAATTAAATTCAT Gene: Mfla_2570: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Methylotenera mobilis JLW8 Site: position = -22 score = 5.35694 sequence = ATTAATTTTATTCAT Gene: Mmol_0965: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 2. | |||||||||||||
| metF |
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Neisseria meningitidis MC58 Site: position = -110 score = 4.12849 sequence = ATTAGAAATTTTCAT Site: position = -79 score = 4.08205 sequence = TTGAAATTGACTCAT Gene: NMB0943: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| metE |
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Nitrosomonas europaea ATCC 19718 Site: position = -98 score = 5.35694 sequence = ATGAAAATTATTCAT Gene: NE1436: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Nitrosospira multiformis ATCC 25196 Site: position = -125 score = 5.8124 sequence = ATGAATTTTATTCAT Gene: Nmul_A2634: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Thiobacillus denitrificans Site: position = -98 score = 5.19237 sequence = ATGAGTGTTATTCAT Gene: Tbd_2286: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Chromobacterium violaceum ATCC 12472 Site: position = -67 score = 4.77053 sequence = ATGAGTTTGAATCAT Gene: CV3604: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: NMB0944: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Laribacter hongkongensis HLHK9 Site: position = -97 score = 5.8124 sequence = ATGAATAAAATTCAT Site: position = -76 score = 4.2641 sequence = ATGAAATAAAACCAT Gene: LHK_00469: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Methylobacillus flagellatus KT Site: position = -92 score = 5.8124 sequence = ATGAATTTAATTCAT Gene: Mfla_2571: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Methylotenera mobilis JLW8 Site: position = -96 score = 5.35694 sequence = ATGAATAAAATTAAT Gene: Mmol_0966: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |