Regulog MetR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 2 | 2 |
| Burkholderia mallei ATCC 23344 | 2 | 2 |
| Burkholderia sp. 383 | 5 | 4 |
| Burkholderia cepacia AMMD | 2 | 2 |
| Burkholderia vietnamiensis G4 | 2 | 2 |
| Burkholderia glumae BGR1 | 4 | 4 |
| Burkholderia xenovorans LB400 | ||
| Burkholderia phymatum STM815 | 2 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| metR |
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Burkholderia pseudomallei K96243 Site: position = -41 score = 4.94364 sequence = ATGAATTTTTTTCAA Gene: BPSL2546: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Burkholderia mallei ATCC 23344 Site: position = -41 score = 4.94364 sequence = ATGAATTTTTTTCAA Gene: BMA0468: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Burkholderia sp. 383 Site: position = 0 score = 5.04933 sequence = ATGGCATTATTTCAT Gene: Bcep18194_B0361: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Burkholderia cepacia AMMD Site: position = -60 score = 5.04933 sequence = ATGGCATTATTTCAT Gene: Bamb_4647: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Burkholderia vietnamiensis G4 Site: position = 0 score = 5.04933 sequence = ATGGCATTATTTCAT Gene: Bcep1808_3538: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*2
Burkholderia glumae BGR1 Site: position = -75 score = 4.7563 sequence = ATGGATTGTTTTCAT Gene: bglu_2g04940: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family Site: position = -40 score = 4.69335 sequence = ATGAAAAATATTCAG Gene: bglu_1g08420: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Gene: Bxe_B1251: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
*
Burkholderia phymatum STM815 Site: position = -45 score = 5.26276 sequence = ATGGATTAATTTCAT Gene: Bphy_5471: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
| CRON 2. | |||||||||
| PF08908 |
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Burkholderia sp. 383 Site: position = -166 score = 4.65489 sequence = ATGAGATTAATTCAC Gene: Bcep18194_C7370: Protein of unknown function DUF1852 |
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Protein of unknown function DUF1852 |
| metE2 |
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Gene: Bcep18194_C7369: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
| CRON 3. | |||||||||
| metE |
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Burkholderia pseudomallei K96243 Site: position = -90 score = 4.94364 sequence = TTGAAAAAAATTCAT Gene: BPSL2545: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Burkholderia mallei ATCC 23344 Site: position = -90 score = 4.94364 sequence = TTGAAAAAAATTCAT Gene: BMA0467: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Burkholderia sp. 383 Site: position = -82 score = 5.04933 sequence = ATGAAATAATGCCAT Gene: Bcep18194_B0362: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Burkholderia cepacia AMMD Site: position = -83 score = 5.04933 sequence = ATGAAATAATGCCAT Gene: Bamb_4646: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Burkholderia vietnamiensis G4 Site: position = -82 score = 5.04933 sequence = ATGAAATAATGCCAT Gene: Bcep1808_3537: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*2
Burkholderia glumae BGR1 Site: position = -106 score = 4.69335 sequence = CTGAATATTTTTCAT Gene: bglu_1g08430: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) Site: position = -87 score = 4.7563 sequence = ATGAAAACAATCCAT Gene: bglu_2g04930: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Burkholderia phymatum STM815 Site: position = -81 score = 5.26276 sequence = ATGAAATTAATCCAT Gene: Bphy_5470: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 4. | |||||||||
| metR2 |
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Burkholderia sp. 383 Site: position = -20 score = 4.88043 sequence = ATGAATTTTACTCAT Gene: Bcep18194_C7372: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |