Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ScrR - Sphingomonadales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sucrose utilization
Effector: Sucrose
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 3 2
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444 5 3
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1
Sphingopyxis alaskensis RB2256
Zymomonas mobilis subsp. mobilis ZM4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
scrT
*
Erythrobacter litoralis HTCC2594

Site:
position = -112
score = 6.08236
sequence = CAATGCAAACGATTGCAACC

Site:
position = -88
score = 6.10326
sequence = TTTTGCAATCGTTTGCAATC

Gene: ELI_04245: Predicted sucrose transporter, MelB family
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -84
score = 5.26075
sequence = TTATGCAATCGATTGTTGTC

Gene: Saro_1877: Predicted sucrose transporter, MelB family
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Predicted sucrose transporter, MelB family
COG3345
 
Erythrobacter litoralis HTCC2594
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1878: Alpha-galactosidase (EC 3.2.1.22)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Alpha-galactosidase (EC 3.2.1.22)
sacB
 
Erythrobacter litoralis HTCC2594

Gene: ELI_04235: Levansucrase (EC 2.4.1.10)
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444

Gene: Saro_1879: Levansucrase (EC 2.4.1.10)
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Levansucrase (EC 2.4.1.10)
scrR
 
Erythrobacter litoralis HTCC2594

Gene: ELI_04250: Sucrose utilization transcriptional regulator ScrR, LacI family
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -200
score = 5.84293
sequence = CCATACAATCGTTTGCAATG

Site:
position = -177
score = 5.7362
sequence = TTTAGCAATCGATTGCATCG

Gene: Saro_1880: Sucrose utilization transcriptional regulator ScrR, LacI family
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Sucrose utilization transcriptional regulator ScrR, LacI family
 
CRON 2.
omp(Scr)
*
Erythrobacter litoralis HTCC2594

Site:
position = -103
score = 6.10326
sequence = GATTGCAAACGATTGCAAAA

Site:
position = -79
score = 6.08236
sequence = GGTTGCAATCGTTTGCATTG

Gene: ELI_04240: Predicted sucrose-specific TonB-dependent receptor
 
Erythrobacter sp. NAP1
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -106
score = 5.7362
sequence = CGATGCAATCGATTGCTAAA

Site:
position = -83
score = 5.84293
sequence = CATTGCAAACGATTGTATGG

Gene: Saro_1881: Predicted sucrose-specific TonB-dependent receptor
 
Sphingobium japonicum UT26S
 
Sphingomonas wittichii RW1
 
Sphingopyxis alaskensis RB2256
 
Zymomonas mobilis subsp. mobilis ZM4
Predicted sucrose-specific TonB-dependent receptor
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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