Regulog Csal_3216 - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Cellvibrio japonicus Ueda107
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Marinobacter aqueolei
Marinobacter sp. ELB17
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043	7	2
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
Csal_3216	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -120 score = 7.29043 sequence = TTTTGGTAGCGCTACCAAAA Site: position = -78 score = 6.77048 sequence = TATTGGTAGCGCTACCAGAT Gene: Csal_3216: Predicted transcriptional regulator, LacI family	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Predicted transcriptional regulator, LacI family
Csal_3217	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_3217: Hypothetical protein	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Hypothetical protein

CRON 2.
Csal_3215	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17	Alcanivorax borkumensis SK2	* Chromohalobacter salexigens DSM 3043 Site: position = -126 score = 6.77048 sequence = ATCTGGTAGCGCTACCAATA Site: position = -84 score = 7.29043 sequence = TTTTGGTAGCGCTACCAAAA Gene: Csal_3215: Predicted sugar carboxylase	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Predicted sugar carboxylase
Csal_3214	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_16323: TRAP transporterm, DctP subunit	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_3214: TRAP transporterm, DctP subunit	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	TRAP transporterm, DctP subunit
Csal_3213	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_16318: TRAP transporter, DctQ system	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_3213: TRAP transporter, DctQ system	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	TRAP transporter, DctQ system
Csal_3212	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_16313: TRAP transporter, DctM subunit	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_3212: TRAP transporter, DctM subunit	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	TRAP transporter, DctM subunit
Csal_3211	Cellvibrio japonicus Ueda107	Teredinibacter turnerae T7901	Saccharophagus degradans 2-40	Marinobacter aqueolei	Marinobacter sp. ELB17	Alcanivorax borkumensis SK2	Chromohalobacter salexigens DSM 3043 Gene: Csal_3211: Predicted NAD-dependent sugar epimerase/dehydratase	Hahella chejuensis KCTC 2396	Marinomonas sp. MWYL1	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Reinekea sp. MED297	Predicted NAD-dependent sugar epimerase/dehydratase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Csal_3216 - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --