Regulog NanR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Sialic acid utilization |
| Effector: | N-acetylneuraminic acid |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - GntR/Others
- By effector - N-acetylneuraminic acid
- By pathway - Sialic acid utilization
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | 2 | 2 |
| Corynebacterium diphtheriae NCTC 13129 | 9 | 4 |
| Corynebacterium efficiens YS-314 | ||
| Corynebacterium glutamicum ATCC 13032 | 8 | 3 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | 7 | 4 |
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| DIP0330 |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -29 score = 6.09059 sequence = TCCAGACGTCAGACGTCTGAT Gene: DIP0330: Sialidase (EC 3.2.1.18) |
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Sialidase (EC 3.2.1.18) |
| CRON 2. | |||||||||
| nanI |
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*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -149 score = 5.55062 sequence = ATCAGACATCTGACATGTGGT Site: position = -156 score = 6.13645 sequence = ATCAGACATCAGACATCTGAC Gene: ckrop_1872: exo-alpha-sialidase |
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exo-alpha-sialidase |
| CRON 3. | |||||||||
| DIP0543 |
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*
Corynebacterium diphtheriae NCTC 13129 Site: position = -54 score = 5.65249 sequence = GTCAGACGTCTGATGTCAGAT Site: position = -61 score = 6.58557 sequence = ATAGGACGTCAGACGTCTGAT Gene: DIP0543: Sialidase (EC 3.2.1.18) |
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Sialidase (EC 3.2.1.18) |
| CRON 4. | |||||||||
| DIP0516 |
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*
Corynebacterium diphtheriae NCTC 13129 Site: position = -36 score = 5.96153 sequence = ATCCTACATCAGACGTCTGAT Site: position = -29 score = 5.43699 sequence = ATCAGACGTCTGATGTCGGGG Gene: DIP0516: Doubtful CDS. No significant database matches |
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Doubtful CDS. No significant database matches |
| nanR |
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Corynebacterium aurimucosum ATCC 700975 Site: position = -159 score = 5.63886 sequence = AGAATACATCAGACGTCTGAT Site: position = -152 score = 6.01183 sequence = ATCAGACGTCTGATGTGTGAA Gene: cauri_0611: Sialic acid utilization transcriptional regulator NanR, GntR family |
Gene: DIP0517: Sialic acid utilization transcriptional regulator NanR, GntR family |
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*
Corynebacterium glutamicum ATCC 13032 Site: position = -196 score = 5.40961 sequence = ATCAGACATCAGACGTTTAGG Gene: cg2936: Sialic acid utilization transcriptional regulator NanR, GntR family |
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Gene: ckrop_1863: Sialic acid utilization transcriptional regulator NanR, GntR family |
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Sialic acid utilization transcriptional regulator NanR, GntR family |
| nanK |
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Gene: DIP0518: N-acetylmannosamine kinase (EC 2.7.1.60) |
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Gene: cg2932: N-acetylmannosamine kinase (EC 2.7.1.60) |
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*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -72 score = 5.58773 sequence = ATAGGTTGTAAGACGTCTGAC Gene: ckrop_1865: N-acetylmannosamine kinase (EC 2.7.1.60) |
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N-acetylmannosamine kinase (EC 2.7.1.60) |
| nanE |
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Gene: DIP0519: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
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Gene: cg2933: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
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Gene: ckrop_1864: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
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N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
| nagA |
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Gene: cauri_0237: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: DIP0520: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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*
Corynebacterium glutamicum ATCC 13032 Site: position = -54 score = 5.68302 sequence = ATAAGACATCATACGTCCTAT Gene: cg2929: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -127 score = 5.5224 sequence = CATGGACGTCAGACGTCTTAC Gene: ckrop_1866: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagB |
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Gene: cauri_0238: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: DIP0521: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: CE2518: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: cg2928: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: ckrop_1869: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: cur_1512: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| hex |
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Gene: cg2927: Predicted hexosaminidase (EC 3.2.1.52) |
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Predicted hexosaminidase (EC 3.2.1.52) |
| nanA |
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*
Corynebacterium aurimucosum ATCC 700975 Site: position = -58 score = 5.71341 sequence = AAGAGACGTATGATGTCTTAT Gene: cauri_0609: N-acetylneuraminate lyase (EC 2.5.1.56) |
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*
Corynebacterium glutamicum ATCC 13032 Site: position = -180 score = 6.05568 sequence = ATAGGACGTATGATGTCTTAT Gene: cg2931: N-acetylneuraminate lyase (EC 2.5.1.56) |
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N-acetylneuraminate lyase (EC 2.5.1.56) |
| nanX |
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Gene: cg2935: Neuraminidase |
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Neuraminidase |
| CRON 5. | |||||||||
| nanT |
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*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -99 score = 5.45488 sequence = ACCACATGTCAGATGTCTGAT Site: position = -92 score = 5.95059 sequence = GTCAGATGTCTGATGTCTGAT Gene: ckrop_1873: Sialic acid transporter |
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Sialic acid transporter |
| cheA |
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Corynebacterium diphtheriae NCTC 13129 Site: position = -71 score = 6.23906 sequence = ATCAGACGTCTGACGTCTGGA Gene: DIP0331: Putative chemotaxis protein, resembles cheA |
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Gene: ckrop_1874: Putative chemotaxis protein, resembles cheA |
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Putative chemotaxis protein, resembles cheA |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |