Regulog NanR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Sialic acid utilization
Effector:	N-acetylneuraminic acid
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - GntR/Others
By effector - N-acetylneuraminic acid
By pathway - Sialic acid utilization

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975	2	2
Corynebacterium diphtheriae NCTC 13129	9	4
Corynebacterium efficiens YS-314
Corynebacterium glutamicum ATCC 13032	8	3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385	7	4
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
DIP0330	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	* Corynebacterium diphtheriae NCTC 13129 Site: position = -29 score = 6.09059 sequence = TCCAGACGTCAGACGTCTGAT Gene: DIP0330: Sialidase (EC 3.2.1.18)	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sialidase (EC 3.2.1.18)

CRON 2.
nanI	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	* Corynebacterium kroppenstedtii DSM 44385 Site: position = -149 score = 5.55062 sequence = ATCAGACATCTGACATGTGGT Site: position = -156 score = 6.13645 sequence = ATCAGACATCAGACATCTGAC Gene: ckrop_1872: exo-alpha-sialidase	Corynebacterium urealyticum DSM 7109	exo-alpha-sialidase

CRON 3.
DIP0543	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	* Corynebacterium diphtheriae NCTC 13129 Site: position = -54 score = 5.65249 sequence = GTCAGACGTCTGATGTCAGAT Site: position = -61 score = 6.58557 sequence = ATAGGACGTCAGACGTCTGAT Gene: DIP0543: Sialidase (EC 3.2.1.18)	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sialidase (EC 3.2.1.18)

CRON 4.
DIP0516	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	* Corynebacterium diphtheriae NCTC 13129 Site: position = -36 score = 5.96153 sequence = ATCCTACATCAGACGTCTGAT Site: position = -29 score = 5.43699 sequence = ATCAGACGTCTGATGTCGGGG Gene: DIP0516: Doubtful CDS. No significant database matches	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Doubtful CDS. No significant database matches
nanR	Corynebacterium amycolatum SK46	* Corynebacterium aurimucosum ATCC 700975 Site: position = -159 score = 5.63886 sequence = AGAATACATCAGACGTCTGAT Site: position = -152 score = 6.01183 sequence = ATCAGACGTCTGATGTGTGAA Gene: cauri_0611: Sialic acid utilization transcriptional regulator NanR, GntR family	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0517: Sialic acid utilization transcriptional regulator NanR, GntR family	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -196 score = 5.40961 sequence = ATCAGACATCAGACGTTTAGG Gene: cg2936: Sialic acid utilization transcriptional regulator NanR, GntR family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1863: Sialic acid utilization transcriptional regulator NanR, GntR family	Corynebacterium urealyticum DSM 7109	Sialic acid utilization transcriptional regulator NanR, GntR family
nanK	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0518: N-acetylmannosamine kinase (EC 2.7.1.60)	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg2932: N-acetylmannosamine kinase (EC 2.7.1.60)	Corynebacterium jeikeium K411	* Corynebacterium kroppenstedtii DSM 44385 Site: position = -72 score = 5.58773 sequence = ATAGGTTGTAAGACGTCTGAC Gene: ckrop_1865: N-acetylmannosamine kinase (EC 2.7.1.60)	Corynebacterium urealyticum DSM 7109	N-acetylmannosamine kinase (EC 2.7.1.60)
nanE	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0519: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg2933: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1864: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	Corynebacterium urealyticum DSM 7109	N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
nagA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0237: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0520: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -54 score = 5.68302 sequence = ATAAGACATCATACGTCCTAT Gene: cg2929: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Corynebacterium jeikeium K411	* Corynebacterium kroppenstedtii DSM 44385 Site: position = -127 score = 5.5224 sequence = CATGGACGTCAGACGTCTTAC Gene: ckrop_1866: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Corynebacterium urealyticum DSM 7109	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0238: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP0521: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Corynebacterium efficiens YS-314 Gene: CE2518: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Corynebacterium glutamicum ATCC 13032 Gene: cg2928: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1869: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Corynebacterium urealyticum DSM 7109 Gene: cur_1512: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
hex	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg2927: Predicted hexosaminidase (EC 3.2.1.52)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted hexosaminidase (EC 3.2.1.52)
nanA	Corynebacterium amycolatum SK46	* Corynebacterium aurimucosum ATCC 700975 Site: position = -58 score = 5.71341 sequence = AAGAGACGTATGATGTCTTAT Gene: cauri_0609: N-acetylneuraminate lyase (EC 2.5.1.56)	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -180 score = 6.05568 sequence = ATAGGACGTATGATGTCTTAT Gene: cg2931: N-acetylneuraminate lyase (EC 2.5.1.56)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	N-acetylneuraminate lyase (EC 2.5.1.56)
nanX	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg2935: Neuraminidase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Neuraminidase

CRON 5.
nanT	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	* Corynebacterium kroppenstedtii DSM 44385 Site: position = -99 score = 5.45488 sequence = ACCACATGTCAGATGTCTGAT Site: position = -92 score = 5.95059 sequence = GTCAGATGTCTGATGTCTGAT Gene: ckrop_1873: Sialic acid transporter	Corynebacterium urealyticum DSM 7109	Sialic acid transporter
cheA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	* Corynebacterium diphtheriae NCTC 13129 Site: position = -71 score = 6.23906 sequence = ATCAGACGTCTGACGTCTGGA Gene: DIP0331: Putative chemotaxis protein, resembles cheA	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_1874: Putative chemotaxis protein, resembles cheA	Corynebacterium urealyticum DSM 7109	Putative chemotaxis protein, resembles cheA

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NanR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --