Regulog Nfa20840 - Nocardiaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Nocardiaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Nocardia farcinica IFM 10152	7	1
Rhodococcus erythropolis PR4
Rhodococcus opacus B4	4	4
Rhodococcus sp. RHA1	11	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
Arth_3539	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	* Rhodococcus opacus B4 Site: position = -114 score = 5.60492 sequence = CTTGCTGTATACAAGACG Gene: ROP_14200: Protein of unknown function DUF2848	* Rhodococcus sp. RHA1 Site: position = -114 score = 5.60492 sequence = CTTGCTGTATACAAGACG Gene: RHA1_ro03018: Protein of unknown function DUF2848	Protein of unknown function DUF2848

CRON 2.
Arth_3540-2	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	* Rhodococcus opacus B4 Site: position = -105 score = 5.60492 sequence = CGTCTTGTATACAGCAAG Gene: ROP_14210: Major facilitator superfamily transporter	* Rhodococcus sp. RHA1 Site: position = -106 score = 5.60492 sequence = CGTCTTGTATACAGCAAG Gene: RHA1_ro03017: Major facilitator superfamily transporter	Major facilitator superfamily transporter

CRON 3.
Arth_3540	* Nocardia farcinica IFM 10152 Site: position = -209 score = 4.98988 sequence = CCGATGGTATACAACTGG Gene: nfa20830: Major facilitator superfamily transporter	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	* Rhodococcus sp. RHA1 Site: position = -204 score = 5.12177 sequence = CCGGTCGTATACAACTGG Gene: RHA1_ro03857: Major facilitator superfamily transporter	Major facilitator superfamily transporter
Nfa20840	Nocardia farcinica IFM 10152 Gene: nfa20840: Transcriptional regulator, GntR family	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro03856: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
Arth_3542	Nocardia farcinica IFM 10152 Gene: nfa20850: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Rhodococcus erythropolis PR4	Rhodococcus opacus B4 Gene: ROP_27410: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Rhodococcus sp. RHA1 Gene: RHA1_ro03855: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
nfa20860	Nocardia farcinica IFM 10152 Gene: nfa20860: dihydroorotate dehydrogenase	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro03854: dihydroorotate dehydrogenase	dihydroorotate dehydrogenase
nfa20870	Nocardia farcinica IFM 10152 Gene: nfa20870: 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro03853: 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)	4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3)
nfa20880	Nocardia farcinica IFM 10152 Gene: nfa20880: cupin 2 domain-containing protein	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro03852: cupin 2 domain-containing protein	cupin 2 domain-containing protein
nfa20890	Nocardia farcinica IFM 10152 Gene: nfa20890: NADH-FMN oxidoreductase	Rhodococcus erythropolis PR4	Rhodococcus opacus B4	Rhodococcus sp. RHA1 Gene: RHA1_ro03851: NADH-FMN oxidoreductase	NADH-FMN oxidoreductase

CRON 4.
Nfa20840	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	* Rhodococcus opacus B4 Site: position = -318 score = 3.45608 sequence = GATGGTGTGAACATCCCG Site: position = -26 score = 4.78618 sequence = CATATTGTATGCAACAAA Site: position = -37 score = 4.31986 sequence = ATTGGTGTATACATATTG Gene: ROP_14220: Transcriptional regulator, GntR family	* Rhodococcus sp. RHA1 Site: position = -8 score = 4.32546 sequence = CATATTGTATGCAGGAAA Site: position = -19 score = 4.7414 sequence = TGTGGTGTATACATATTG Gene: RHA1_ro03016: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
Arth_3542-3	Nocardia farcinica IFM 10152	Rhodococcus erythropolis PR4	* Rhodococcus opacus B4 Site: position = -56 score = 4.78618 sequence = TTTGTTGCATACAATATG Site: position = -45 score = 4.31986 sequence = CAATATGTATACACCAAT Gene: ROP_14230: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	* Rhodococcus sp. RHA1 Site: position = -42 score = 4.7414 sequence = CAATATGTATACACCACA Site: position = -53 score = 4.32546 sequence = TTTCCTGCATACAATATG Gene: RHA1_ro03015: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Nfa20840 - Nocardiaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --