Regulog Nfa20840 - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 7 | 1 |
| Rhodococcus erythropolis PR4 | ||
| Rhodococcus opacus B4 | 4 | 4 |
| Rhodococcus sp. RHA1 | 11 | 5 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| Arth_3539 |
|
|
*
Rhodococcus opacus B4 Site: position = -114 score = 5.60492 sequence = CTTGCTGTATACAAGACG Gene: ROP_14200: Protein of unknown function DUF2848 |
*
Rhodococcus sp. RHA1 Site: position = -114 score = 5.60492 sequence = CTTGCTGTATACAAGACG Gene: RHA1_ro03018: Protein of unknown function DUF2848 |
Protein of unknown function DUF2848 |
| CRON 2. | |||||
| Arth_3540-2 |
|
|
*
Rhodococcus opacus B4 Site: position = -105 score = 5.60492 sequence = CGTCTTGTATACAGCAAG Gene: ROP_14210: Major facilitator superfamily transporter |
*
Rhodococcus sp. RHA1 Site: position = -106 score = 5.60492 sequence = CGTCTTGTATACAGCAAG Gene: RHA1_ro03017: Major facilitator superfamily transporter |
Major facilitator superfamily transporter |
| CRON 3. | |||||
| Arth_3540 |
*
Nocardia farcinica IFM 10152 Site: position = -209 score = 4.98988 sequence = CCGATGGTATACAACTGG Gene: nfa20830: Major facilitator superfamily transporter |
|
|
*
Rhodococcus sp. RHA1 Site: position = -204 score = 5.12177 sequence = CCGGTCGTATACAACTGG Gene: RHA1_ro03857: Major facilitator superfamily transporter |
Major facilitator superfamily transporter |
| Nfa20840 |
Gene: nfa20840: Transcriptional regulator, GntR family |
|
|
Gene: RHA1_ro03856: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| Arth_3542 |
Gene: nfa20850: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
|
Gene: ROP_27410: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
Gene: RHA1_ro03855: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
| nfa20860 |
Gene: nfa20860: dihydroorotate dehydrogenase |
|
|
Gene: RHA1_ro03854: dihydroorotate dehydrogenase |
dihydroorotate dehydrogenase |
| nfa20870 |
Gene: nfa20870: 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3) |
|
|
Gene: RHA1_ro03853: 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3) |
4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.13.3) |
| nfa20880 |
Gene: nfa20880: cupin 2 domain-containing protein |
|
|
Gene: RHA1_ro03852: cupin 2 domain-containing protein |
cupin 2 domain-containing protein |
| nfa20890 |
Gene: nfa20890: NADH-FMN oxidoreductase |
|
|
Gene: RHA1_ro03851: NADH-FMN oxidoreductase |
NADH-FMN oxidoreductase |
| CRON 4. | |||||
| Nfa20840 |
|
|
*
Rhodococcus opacus B4 Site: position = -318 score = 3.45608 sequence = GATGGTGTGAACATCCCG Site: position = -26 score = 4.78618 sequence = CATATTGTATGCAACAAA Site: position = -37 score = 4.31986 sequence = ATTGGTGTATACATATTG Gene: ROP_14220: Transcriptional regulator, GntR family |
*
Rhodococcus sp. RHA1 Site: position = -8 score = 4.32546 sequence = CATATTGTATGCAGGAAA Site: position = -19 score = 4.7414 sequence = TGTGGTGTATACATATTG Gene: RHA1_ro03016: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| Arth_3542-3 |
|
|
*
Rhodococcus opacus B4 Site: position = -56 score = 4.78618 sequence = TTTGTTGCATACAATATG Site: position = -45 score = 4.31986 sequence = CAATATGTATACACCAAT Gene: ROP_14230: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
*
Rhodococcus sp. RHA1 Site: position = -42 score = 4.7414 sequence = CAATATGTATACACCACA Site: position = -53 score = 4.32546 sequence = TTTCCTGCATACAATATG Gene: RHA1_ro03015: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |