Regulog GabR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Gamma-aminobutyrate utilization
Effector:	Gamma-aminobutyric acid
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By TF family - GntR/MocR
By effector - Gamma-aminobutyric acid
By pathway - Gamma-aminobutyrate utilization

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia mallei ATCC 23344	5	2
Burkholderia phymatum STM815	8	3
Burkholderia glumae BGR1	2	1
Burkholderia cepacia AMMD	6	2
Burkholderia pseudomallei K96243	6	2
Burkholderia sp. 383	6	2
Burkholderia vietnamiensis G4	6	2
Burkholderia xenovorans LB400	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
gabT	* Burkholderia mallei ATCC 23344 Site: position = -139 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: BMAA1480: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	2 Burkholderia phymatum STM815* Site: position = -143 score = 10.8175 sequence = ATGGCTC-(16)-GTGGCTC-(9)-GAGCCGT Gene: Bphy_4851: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) Site: position = -114 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bphy_4618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia glumae BGR1 Site: position = -127 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: bglu_2g03380: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia cepacia AMMD Site: position = -66 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bamb_4711: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia pseudomallei K96243 Site: position = -139 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: BPSS0281: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia sp. 383 Site: position = -118 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bcep18194_B0280: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia vietnamiensis G4 Site: position = -124 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bcep1808_3589: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	* Burkholderia xenovorans LB400 Site: position = -114 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bxe_B0834: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD	Burkholderia mallei ATCC 23344 Gene: BMAA1481: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	2 Burkholderia phymatum STM815 Gene: Bphy_4617: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) Gene: Bphy_4850: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia glumae BGR1 Gene: bglu_2g03370: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia cepacia AMMD Gene: Bamb_4712: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia pseudomallei K96243 Gene: BPSS0280: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia sp. 383 Gene: Bcep18194_B0279: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia vietnamiensis G4 Gene: Bcep1808_3590: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Burkholderia xenovorans LB400 Gene: Bxe_B0833: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

CRON 2.
gbtA	* Burkholderia mallei ATCC 23344 Site: position = -107 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: BMAA0431: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	4 Burkholderia phymatum STM815* Gene: Bphy_6039: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bphy_2383: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bphy_7799: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Site: position = -161 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bphy_4321: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Burkholderia glumae BGR1	2 Burkholderia cepacia AMMD* Site: position = -107 score = 11.1193 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GGACCGT Gene: Bamb_3296: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bamb_4297: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	* Burkholderia pseudomallei K96243 Site: position = -107 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: BPSS1738: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	* Burkholderia sp. 383 Site: position = -107 score = 11.6588 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bcep18194_B2170: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	* Burkholderia vietnamiensis G4 Site: position = -107 score = 11.6588 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bcep1808_4395: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	2 Burkholderia xenovorans LB400* Gene: Bxe_A3469: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Site: position = -129 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bxe_B2933: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component	Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD	Burkholderia mallei ATCC 23344 Gene: BMAA0432: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	4 Burkholderia phymatum STM815 Gene: Bphy_2382: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_7798: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_6038: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_4322: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Burkholderia glumae BGR1	2 Burkholderia cepacia AMMD Gene: Bamb_3297: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bamb_4296: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Burkholderia pseudomallei K96243 Gene: BPSS1737: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Burkholderia sp. 383 Gene: Bcep18194_B2169: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_4396: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	2 Burkholderia xenovorans LB400 Gene: Bxe_B2932: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bxe_A3470: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein	Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB	Burkholderia mallei ATCC 23344 Gene: BMAA0433: Predicted gamma-aminobutyrate ABC transporter, permease component	4 Burkholderia phymatum STM815 Gene: Bphy_7800: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_4323: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_6037: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_2381: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia glumae BGR1	2 Burkholderia cepacia AMMD Gene: Bamb_4295: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bamb_3298: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia pseudomallei K96243 Gene: BPSS1736: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia sp. 383 Gene: Bcep18194_B2168: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia vietnamiensis G4 Gene: Bcep1808_4397: Predicted gamma-aminobutyrate ABC transporter, permease component	2 Burkholderia xenovorans LB400 Gene: Bxe_A3471: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bxe_B2931: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC	Burkholderia mallei ATCC 23344	4 Burkholderia phymatum STM815 Gene: Bphy_2380: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_6036: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_4324: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_7801: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia glumae BGR1	2 Burkholderia cepacia AMMD Gene: Bamb_4294: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bamb_3299: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia pseudomallei K96243 Gene: BPSS1735: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia sp. 383 Gene: Bcep18194_B2167: Predicted gamma-aminobutyrate ABC transporter, permease component	Burkholderia vietnamiensis G4 Gene: Bcep1808_4398: Predicted gamma-aminobutyrate ABC transporter, permease component	2 Burkholderia xenovorans LB400 Gene: Bxe_A3472: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bxe_B2930: Predicted gamma-aminobutyrate ABC transporter, permease component	Predicted gamma-aminobutyrate ABC transporter, permease component

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GabR - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --