Regulog GabR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Gamma-aminobutyrate utilization |
| Effector: | Gamma-aminobutyric acid |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/MocR
- By effector - Gamma-aminobutyric acid
- By pathway - Gamma-aminobutyrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia mallei ATCC 23344 | 5 | 2 |
| Burkholderia phymatum STM815 | 8 | 3 |
| Burkholderia glumae BGR1 | 2 | 1 |
| Burkholderia cepacia AMMD | 6 | 2 |
| Burkholderia pseudomallei K96243 | 6 | 2 |
| Burkholderia sp. 383 | 6 | 2 |
| Burkholderia vietnamiensis G4 | 6 | 2 |
| Burkholderia xenovorans LB400 | 6 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| gabT |
*
Burkholderia mallei ATCC 23344 Site: position = -139 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: BMAA1480: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*2
Burkholderia phymatum STM815 Site: position = -143 score = 10.8175 sequence = ATGGCTC-(16)-GTGGCTC-(9)-GAGCCGT Gene: Bphy_4851: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) Site: position = -114 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bphy_4618: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia glumae BGR1 Site: position = -127 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: bglu_2g03380: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia cepacia AMMD Site: position = -66 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bamb_4711: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia pseudomallei K96243 Site: position = -139 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: BPSS0281: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia sp. 383 Site: position = -118 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bcep18194_B0280: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia vietnamiensis G4 Site: position = -124 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bcep1808_3589: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
*
Burkholderia xenovorans LB400 Site: position = -114 score = 11.9334 sequence = TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA Gene: Bxe_B0834: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) |
| gabD |
Gene: BMAA1481: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
2
Burkholderia phymatum STM815 Gene: Bphy_4617: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) Gene: Bphy_4850: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: bglu_2g03370: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bamb_4712: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: BPSS0280: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bcep18194_B0279: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bcep1808_3590: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Gene: Bxe_B0833: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
| CRON 2. | |||||||||
| gbtA |
*
Burkholderia mallei ATCC 23344 Site: position = -107 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: BMAA0431: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*4
Burkholderia phymatum STM815 Gene: Bphy_6039: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bphy_2383: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bphy_7799: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Site: position = -161 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bphy_4321: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
|
*2
Burkholderia cepacia AMMD Site: position = -107 score = 11.1193 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GGACCGT Gene: Bamb_3296: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Gene: Bamb_4297: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*
Burkholderia pseudomallei K96243 Site: position = -107 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: BPSS1738: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*
Burkholderia sp. 383 Site: position = -107 score = 11.6588 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bcep18194_B2170: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*
Burkholderia vietnamiensis G4 Site: position = -107 score = 11.6588 sequence = GTGGTCC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bcep1808_4395: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
*2
Burkholderia xenovorans LB400 Gene: Bxe_A3469: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component Site: position = -129 score = 11.9124 sequence = GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT Gene: Bxe_B2933: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component |
| gbtD |
Gene: BMAA0432: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
4
Burkholderia phymatum STM815 Gene: Bphy_2382: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_7798: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_6038: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bphy_4322: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
|
2
Burkholderia cepacia AMMD Gene: Bamb_3297: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bamb_4296: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: BPSS1737: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Bcep18194_B2169: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Gene: Bcep1808_4396: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
2
Burkholderia xenovorans LB400 Gene: Bxe_B2932: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein Gene: Bxe_A3470: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein |
| gbtB |
Gene: BMAA0433: Predicted gamma-aminobutyrate ABC transporter, permease component |
4
Burkholderia phymatum STM815 Gene: Bphy_7800: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_4323: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_6037: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_2381: Predicted gamma-aminobutyrate ABC transporter, permease component |
|
2
Burkholderia cepacia AMMD Gene: Bamb_4295: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bamb_3298: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: BPSS1736: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bcep18194_B2168: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bcep1808_4397: Predicted gamma-aminobutyrate ABC transporter, permease component |
2
Burkholderia xenovorans LB400 Gene: Bxe_A3471: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bxe_B2931: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
| gbtC |
|
4
Burkholderia phymatum STM815 Gene: Bphy_2380: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_6036: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_4324: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bphy_7801: Predicted gamma-aminobutyrate ABC transporter, permease component |
|
2
Burkholderia cepacia AMMD Gene: Bamb_4294: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bamb_3299: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: BPSS1735: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bcep18194_B2167: Predicted gamma-aminobutyrate ABC transporter, permease component |
Gene: Bcep1808_4398: Predicted gamma-aminobutyrate ABC transporter, permease component |
2
Burkholderia xenovorans LB400 Gene: Bxe_A3472: Predicted gamma-aminobutyrate ABC transporter, permease component Gene: Bxe_B2930: Predicted gamma-aminobutyrate ABC transporter, permease component |
Predicted gamma-aminobutyrate ABC transporter, permease component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |