Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YtrA - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Multidrug resistance; Multidrug efflux
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 3 1
Listeria monocytogenes EGD-e 3 1
Listeria seeligeri serovar 1/2b str. SLCC3954 3 1
Listeria welshimeri serovar 6b str. SLCC5334 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ytrA
*
Listeria innocua Clip11262

Site:
position = -66
score = 6.99647
sequence = TACTGTACTATTATAACTAGTACAATT

Gene: lin2343: Transcriptional regulator, GntR family
*
Listeria monocytogenes EGD-e

Site:
position = -65
score = 6.84439
sequence = TACTGTACTATAGTAACTAGTACAATT

Gene: lmo2241: Transcriptional regulator, GntR family
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -64
score = 7.16979
sequence = TAGTGTACTATTATAACTAGTACAATT

Gene: lse_2221: Transcriptional regulator, GntR family
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -60
score = 6.96286
sequence = CAGTGTACTATTGTAACTAGTACAATT

Gene: lwe2258: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
ytrB
 
Listeria innocua Clip11262

Gene: lin2342: ABC transporter, ATP-binding protein
 
Listeria monocytogenes EGD-e

Gene: lmo2240: ABC transporter, ATP-binding protein
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2220: ABC transporter, ATP-binding protein
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2257: ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein
ytrC
 
Listeria innocua Clip11262

Gene: lin2341: ABC transporter permease protein
 
Listeria monocytogenes EGD-e

Gene: lmo2239: ABC transporter permease protein
 
Listeria seeligeri serovar 1/2b str. SLCC3954

Gene: lse_2219: ABC transporter permease protein
 
Listeria welshimeri serovar 6b str. SLCC5334

Gene: lwe2256: ABC transporter permease protein
ABC transporter permease protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD