Regulog RhiR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - LacI
By effector - Rhamogalacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Statistics of regulated genes
Genome	Genes	Operons
Erwinia carotovora subsp. atroseptica SCRI1043	7	2
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Escherichia coli str. K-12 substr. MG1655
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568
Yersinia pestis KIM

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
rhiL	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -116 score = 7.36602 sequence = TTAATGCAAATTTGCATTAA Gene: ECA3751: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein

CRON 2.
rhiX	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -152 score = 6.91744 sequence = TTAATGCAAATTTGCATTGT Gene: ECA3750: hypothetical protein	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	hypothetical protein
rhiN	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3749: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rhiK	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3748: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
rhiG	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3747: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Putatuve rhamnogalacturonides ABC transporter, permease component 2
rhiF	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3746: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiR	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3745: Predicted rhamnogalacturonides utilization transcriptional regulator, LacI family	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Escherichia coli str. K-12 substr. MG1655	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568	Yersinia pestis KIM	Predicted rhamnogalacturonides utilization transcriptional regulator, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhiR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --