Regulog UxuR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LacI
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | 5 | 2 |
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | 5 | 2 |
| Bacillus pumilus SAFR-032 | ||
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Geobacillus kaustophilus HTA426 | ||
| Oceanobacillus iheyensis HTE831 | 3 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| uxaE |
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Oceanobacillus iheyensis HTE831 Site: position = -57 score = 7.00736 sequence = AAATAACAACGTTGTTATTT Gene: OB0366: D-tagaturonate epimerase |
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D-tagaturonate epimerase |
| uxaC |
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Gene: RBAM_012380: Uronate isomerase (EC 5.3.1.12) |
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Gene: BLi03516: Uronate isomerase (EC 5.3.1.12) |
Gene: BPUM_2987: Uronate isomerase (EC 5.3.1.12) |
Gene: BSU12300: Uronate isomerase (EC 5.3.1.12) |
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Gene: OB0367: Uronate isomerase (EC 5.3.1.12) |
Gene: Pjdr2_2923: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| CRON 2. | ||||||||||||
| uxuR |
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Bacillus clausii KSM-K16 Site: position = -141 score = 6.992 sequence = TTATAACAACGTTGTTATTT Site: position = -92 score = 6.992 sequence = TTATAACAACGTTGTTATTT Gene: ABC0302: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family |
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Bacillus licheniformis DSM 13 Site: position = -201 score = 6.42164 sequence = GTTTAACAACGTTGTTAAAA Site: position = -152 score = 6.54208 sequence = CTTTAACAACGTTGTTATTT Site: position = -87 score = 6.992 sequence = TAATAACAACGTTGTTATTT Gene: BLi02121: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family |
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Oceanobacillus iheyensis HTE831 Site: position = -106 score = 6.992 sequence = TTATAACAACGTTGTTATTT Gene: OB3410: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family |
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Predicted glucuronate utilization transcriptional regulator UxuR, LacI family |
| CRON 3. | ||||||||||||
| uxuP |
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Bacillus clausii KSM-K16 Site: position = -87 score = 6.992 sequence = AAATAACAACGTTGTTATAA Site: position = -38 score = 6.992 sequence = AAATAACAACGTTGTTATAA Gene: ABC0301: Predicted glucuronate TRAP-type transporter, periplasmic component |
Gene: BH0701: Predicted glucuronate TRAP-type transporter, periplasmic component |
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Bacillus licheniformis DSM 13 Site: position = -391 score = 6.992 sequence = AAATAACAACGTTGTTATTA Site: position = -326 score = 6.54208 sequence = AAATAACAACGTTGTTAAAG Site: position = -277 score = 6.42164 sequence = TTTTAACAACGTTGTTAAAC Gene: BLi02120: Predicted glucuronate TRAP-type transporter, periplasmic component |
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Predicted glucuronate TRAP-type transporter, periplasmic component |
| uxuQ |
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Gene: ABC0300: Predicted glucuronate TRAP-type transporter, small permease component |
Gene: BH0702: Predicted glucuronate TRAP-type transporter, small permease component |
Gene: BLi02119: Predicted glucuronate TRAP-type transporter, small permease component |
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Predicted glucuronate TRAP-type transporter, small permease component |
| uxuM |
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Gene: ABC0299: Predicted glucuronate TRAP-type transporter, large permease component |
Gene: BH0703: Predicted glucuronate TRAP-type transporter, large permease component |
Gene: BLi02118: Predicted glucuronate TRAP-type transporter, large permease component |
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Predicted glucuronate TRAP-type transporter, large permease component |
| aguA |
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Gene: ABC0298: Alpha-glucosidase (EC 3.2.1.20) |
Gene: BH0704: Alpha-glucosidase (EC 3.2.1.20) |
Gene: BLi02117: Alpha-glucosidase (EC 3.2.1.20) |
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Alpha-glucosidase (EC 3.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |