Regulog UxuR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Glucuronate utilization
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - LacI
By pathway - Glucuronate utilization

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16	5	2
Bacillus halodurans C-125
Bacillus licheniformis DSM 13	5	2
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	3	2
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uxaE	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -57 score = 7.00736 sequence = AAATAACAACGTTGTTATTT Gene: OB0366: D-tagaturonate epimerase	Paenibacillus sp. JDR-2	D-tagaturonate epimerase
uxaC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_012380: Uronate isomerase (EC 5.3.1.12)	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03516: Uronate isomerase (EC 5.3.1.12)	Bacillus pumilus SAFR-032 Gene: BPUM_2987: Uronate isomerase (EC 5.3.1.12)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU12300: Uronate isomerase (EC 5.3.1.12)	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB0367: Uronate isomerase (EC 5.3.1.12)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2923: Uronate isomerase (EC 5.3.1.12)	Uronate isomerase (EC 5.3.1.12)

CRON 2.
uxuR	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -141 score = 6.992 sequence = TTATAACAACGTTGTTATTT Site: position = -92 score = 6.992 sequence = TTATAACAACGTTGTTATTT Gene: ABC0302: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -201 score = 6.42164 sequence = GTTTAACAACGTTGTTAAAA Site: position = -152 score = 6.54208 sequence = CTTTAACAACGTTGTTATTT Site: position = -87 score = 6.992 sequence = TAATAACAACGTTGTTATTT Gene: BLi02121: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -106 score = 6.992 sequence = TTATAACAACGTTGTTATTT Gene: OB3410: Predicted glucuronate utilization transcriptional regulator UxuR, LacI family	Paenibacillus sp. JDR-2	Predicted glucuronate utilization transcriptional regulator UxuR, LacI family

CRON 3.
uxuP	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -87 score = 6.992 sequence = AAATAACAACGTTGTTATAA Site: position = -38 score = 6.992 sequence = AAATAACAACGTTGTTATAA Gene: ABC0301: Predicted glucuronate TRAP-type transporter, periplasmic component	Bacillus halodurans C-125 Gene: BH0701: Predicted glucuronate TRAP-type transporter, periplasmic component	* Bacillus licheniformis DSM 13 Site: position = -391 score = 6.992 sequence = AAATAACAACGTTGTTATTA Site: position = -326 score = 6.54208 sequence = AAATAACAACGTTGTTAAAG Site: position = -277 score = 6.42164 sequence = TTTTAACAACGTTGTTAAAC Gene: BLi02120: Predicted glucuronate TRAP-type transporter, periplasmic component	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, periplasmic component
uxuQ	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0300: Predicted glucuronate TRAP-type transporter, small permease component	Bacillus halodurans C-125 Gene: BH0702: Predicted glucuronate TRAP-type transporter, small permease component	Bacillus licheniformis DSM 13 Gene: BLi02119: Predicted glucuronate TRAP-type transporter, small permease component	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, small permease component
uxuM	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0299: Predicted glucuronate TRAP-type transporter, large permease component	Bacillus halodurans C-125 Gene: BH0703: Predicted glucuronate TRAP-type transporter, large permease component	Bacillus licheniformis DSM 13 Gene: BLi02118: Predicted glucuronate TRAP-type transporter, large permease component	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glucuronate TRAP-type transporter, large permease component
aguA	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0298: Alpha-glucosidase (EC 3.2.1.20)	Bacillus halodurans C-125 Gene: BH0704: Alpha-glucosidase (EC 3.2.1.20)	Bacillus licheniformis DSM 13 Gene: BLi02117: Alpha-glucosidase (EC 3.2.1.20)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Alpha-glucosidase (EC 3.2.1.20)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UxuR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --