Regulog GntR2 - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Gluconate utilization |
| Effector: | D-gluconate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LacI
- By effector - D-gluconate
- By pathway - Gluconate utilization
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | ||
| Bacillus amyloliquefaciens FZB42 | 7 | 1 |
| Bacillus cereus ATCC 14579 | ||
| Bacillus clausii KSM-K16 | 8 | 1 |
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | ||
| Bacillus pumilus SAFR-032 | ||
| Bacillus subtilis subsp. subtilis str. 168 | ||
| Geobacillus kaustophilus HTA426 | 4 | 3 |
| Oceanobacillus iheyensis HTE831 | 9 | 1 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| gnd |
Gene: Aflv_0976: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: RBAM_022170: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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Gene: ABC1926: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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Gene: BLi02567: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: BPUM_2124: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: BSU23860: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
*
Geobacillus kaustophilus HTA426 Site: position = -92 score = 6.55528 sequence = TTCCTAAATCGGTTTAGAAA Gene: GK2344: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: OB0185: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
Gene: Pjdr2_3810: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
| CRON 2. | ||||||||||||
| gntR2 |
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Gene: RBAM_018000: Putative gluconate utilization transcriptional repressor GntR, LacI family |
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*
Bacillus clausii KSM-K16 Site: position = -32 score = 6.79103 sequence = CTACTAAATCGGTTTAGTAA Gene: ABC3358: Putative gluconate utilization transcriptional repressor GntR, LacI family |
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Geobacillus kaustophilus HTA426 Site: position = -36 score = 6.37203 sequence = GAACTAAATCGATTTAGTCT Gene: GK1942: Putative gluconate utilization transcriptional repressor GntR, LacI family |
*
Oceanobacillus iheyensis HTE831 Site: position = -54 score = 6.80988 sequence = TTACTAAATCGATTTACTAA Site: position = -41 score = 5.57204 sequence = TTACTAAACCGTTTTAGTTA Gene: OB2705: Putative gluconate utilization transcriptional repressor GntR, LacI family |
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Putative gluconate utilization transcriptional repressor GntR, LacI family |
| PF01380 |
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Gene: ABC3354: Putative sugar phosphate isomerase, PF01380 family |
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Gene: OB2704: Putative sugar phosphate isomerase, PF01380 family |
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Putative sugar phosphate isomerase, PF01380 family |
| kdgA |
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Gene: RBAM_017970: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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Gene: OB2703: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| ABC3357 |
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Gene: ABC3357: TRAP-type C4-dicarboxylate transport system, periplasmic component |
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Gene: OB2702: TRAP-type C4-dicarboxylate transport system, periplasmic component |
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TRAP-type C4-dicarboxylate transport system, periplasmic component |
| ABC3356 |
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Gene: ABC3356: TRAP-type C4-dicarboxylate transport system, small permease component |
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Gene: OB2701: TRAP-type C4-dicarboxylate transport system, small permease component |
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TRAP-type C4-dicarboxylate transport system, small permease component |
| ABC3355 |
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Gene: ABC3355: TRAP-type C4-dicarboxylate transport system, large permease component |
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Gene: OB2700: TRAP-type C4-dicarboxylate transport system, large permease component |
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TRAP-type C4-dicarboxylate transport system, large permease component |
| BC2796 |
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Gene: ABC3353: Ribose 5-phosphate isomerase A (EC 5.3.1.6) |
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Gene: OB2699: Ribose 5-phosphate isomerase A (EC 5.3.1.6) |
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Ribose 5-phosphate isomerase A (EC 5.3.1.6) |
| kdgK |
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*
Bacillus amyloliquefaciens FZB42 Site: position = -53 score = 6.00139 sequence = TTACTAAACCGGTTTACCAA Site: position = -40 score = 5.68324 sequence = TTACCAAACCGATTTAGTCT Gene: RBAM_017950: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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Gene: ABC3352: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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Gene: OB2698: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| PF00215 |
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Gene: ABC3351: Putative sugar-phosphate decarboxylase, PF00215 family |
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Gene: OB2697: Putative sugar-phosphate decarboxylase, PF00215 family |
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Putative sugar-phosphate decarboxylase, PF00215 family |
| yjmD |
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Gene: RBAM_017960: Predicted mannuronate reductase (EC 1.1.1.131) |
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Gene: ABC0630: Predicted mannuronate reductase (EC 1.1.1.131) |
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Gene: BLi01355: Predicted mannuronate reductase (EC 1.1.1.131) |
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Gene: BSU12330: Predicted mannuronate reductase (EC 1.1.1.131) |
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Predicted mannuronate reductase (EC 1.1.1.131) |
| uxuA |
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Gene: RBAM_017980: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: ABC0631: Mannonate dehydratase (EC 4.2.1.8) |
Gene: BH1063: Mannonate dehydratase (EC 4.2.1.8) |
Gene: BLi01356: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: BSU12340: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: Pjdr2_0333: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| uxuB |
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Gene: RBAM_017990: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: ABC0632: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: BH1067: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: BLi01357: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: BSU12350: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: Pjdr2_0334: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| exuT |
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Gene: RBAM_018010: Hexuronate transporter |
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Gene: BLi01359: Hexuronate transporter |
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Gene: BSU12360: Hexuronate transporter |
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Hexuronate transporter |
| gntK |
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Gene: RBAM_031430: Gluconokinase (EC 2.7.1.12) |
Gene: BC2223: Gluconokinase (EC 2.7.1.12) |
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Gene: BPUM_3602: Gluconokinase (EC 2.7.1.12) |
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Gene: GK1941: Gluconokinase (EC 2.7.1.12) |
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Gluconokinase (EC 2.7.1.12) |
| gntP |
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Gene: RBAM_031440: GntP family gluconate:proton (H+) symporter |
Gene: BC2224: GntP family gluconate:proton (H+) symporter |
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Gene: BPUM_3601: GntP family gluconate:proton (H+) symporter |
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*
Geobacillus kaustophilus HTA426 Site: position = -115 score = 6.60778 sequence = TTACTAAATCGATTTAGCCC Gene: GK1940: GntP family gluconate:proton (H+) symporter |
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Gene: Pjdr2_3594: GntP family gluconate:proton (H+) symporter |
GntP family gluconate:proton (H+) symporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |