Regulog PtxS - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | 2-ketogluconate utilization |
| Effector: | 2-keto-D-gluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By TF family - LacI
- By effector - 2-keto-D-gluconate
- By pathway - 2-ketogluconate utilization
| Genome | Genes | Operons |
|---|---|---|
| Azotobacter vinelandii AvOP | 8 | 3 |
| Pseudomonas aeruginosa PAO1 | 8 | 2 |
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | 5 | 2 |
| Pseudomonas mendocina ymp | ||
| Pseudomonas putida KT2440 | 8 | 3 |
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| kguE |
*
Azotobacter vinelandii AvOP Site: position = -31 score = 6.53795 sequence = AAATGAAACCGGTTTCAGAG Gene: Avin_26880: Epimerase KguE |
*
Pseudomonas aeruginosa PAO1 Site: position = -28 score = 6.53795 sequence = AAATGAAACCGGTTTCAGAG Gene: PA2260: Epimerase KguE |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -2 score = 6.53795 sequence = AAATGAAACCGGTTTCAGAG Gene: PFL_2720: Epimerase KguE |
|
*
Pseudomonas putida KT2440 Site: position = -31 score = 6.67144 sequence = AAATGAAACCGGTTTCATAA Gene: PP3379: Epimerase KguE |
|
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Epimerase KguE |
| kguK |
Gene: Avin_26890: 2-ketogluconate kinase (EC 2.7.1.13) |
Gene: PA2261: 2-ketogluconate kinase (EC 2.7.1.13) |
|
Gene: PFL_2719: 2-ketogluconate kinase (EC 2.7.1.13) |
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Gene: PP3378: 2-ketogluconate kinase (EC 2.7.1.13) |
|
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2-ketogluconate kinase (EC 2.7.1.13) |
| kguT |
Gene: Avin_26900: 2-ketogluconate transporter |
Gene: PA2262: 2-ketogluconate transporter |
|
Gene: PFL_2718: 2-ketogluconate transporter |
|
Gene: PP3377: 2-ketogluconate transporter |
|
|
2-ketogluconate transporter |
| kguD |
Gene: Avin_26910: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) |
Gene: PA2263: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) |
|
Gene: PFL_2717: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) |
|
Gene: PP3376: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) |
|
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2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) |
| gadC |
*
Azotobacter vinelandii AvOP Site: position = -334 score = 5.77834 sequence = CAATGAAATCGGTTTCAATC Gene: Avin_00890: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
Gene: PA2264: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
|
Gene: PFL_0053: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
|
*
Pseudomonas putida KT2440 Site: position = -136 score = 6.42608 sequence = GCATGAAACCGGTTTCAAAA Gene: PP3384: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
|
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, gamma subunit |
| gadB |
Gene: Avin_00900: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
Gene: PA2265: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
|
Gene: PFL_0054: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
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Gene: PP3383: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
|
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, flavoprotein |
| gadA |
Gene: Avin_00910: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
Gene: PA2266: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
|
Gene: PFL_0055: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
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Gene: PP3382: Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
|
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Gluconate 2-dehydrogenase (EC 1.1.99.3), membrane-bound, cytochrome c |
| CRON 2. | |||||||||
| ptxS |
*
Azotobacter vinelandii AvOP Site: position = -65 score = 6.42608 sequence = TACTGAAACCGGTTTCAAGC Gene: Avin_26870: 2-ketogluconate utilization repressor PtxS, LacI family |
*
Pseudomonas aeruginosa PAO1 Site: position = -87 score = 6.52801 sequence = TTCTGAAACCGGTTTCAACT Gene: PA2259: 2-ketogluconate utilization repressor PtxS, LacI family |
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*
Pseudomonas fluorescens Pf-5 Site: position = -59 score = 6.46978 sequence = TCCTGAAACCGGTTTCAGCG Gene: PFL_2721: 2-ketogluconate utilization repressor PtxS, LacI family |
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*
Pseudomonas putida KT2440 Site: position = -47 score = 6.61771 sequence = TATTGAAACCGGTTTCATCA Gene: PP3380: 2-ketogluconate utilization repressor PtxS, LacI family |
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2-ketogluconate utilization repressor PtxS, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |