Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SMb20537 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 5 2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 4 2
Rhizobium leguminosarum bv. viciae 3841 4 2
Rhizobium sp. NGR234 5 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 5 2
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SMb20537
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -69
score = 5.47958
sequence = TTCTTGCAAATTTTCTTAGT

Gene: Atu3107: Transcriptional regulator, LacI family
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -37
score = 5.43477
sequence = GTATTGCAAATTTGCGCTAT

Gene: RHE_CH00074: Transcriptional regulator, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -38
score = 6.2044
sequence = TTCTTGCAAATTTGCATTAT

Gene: RL0083: Transcriptional regulator, LacI family
*
Rhizobium sp. NGR234

Site:
position = -38
score = 5.71711
sequence = CACTTGCAAATTTGCATTGT

Gene: NGR_c15120: Transcriptional regulator, LacI family
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -38
score = 5.97256
sequence = CTCTTGCAAATTTGCATTGA

Gene: SMb20537: Transcriptional regulator, LacI family
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, LacI family
COG4289
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3108: Uncharacterized protein conserved in bacteria
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH00075: Uncharacterized protein conserved in bacteria
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL0084: Uncharacterized protein conserved in bacteria
 
Rhizobium sp. NGR234

Gene: NGR_c15110: Uncharacterized protein conserved in bacteria
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20536: Uncharacterized protein conserved in bacteria
 
Xanthobacter autotrophicus Py2
Uncharacterized protein conserved in bacteria
COG0111
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3109: Phosphoglycerate dehydrogenase and related dehydrogenases
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH00076: Phosphoglycerate dehydrogenase and related dehydrogenases
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL0085: Phosphoglycerate dehydrogenase and related dehydrogenases
 
Rhizobium sp. NGR234

Gene: NGR_c15100: Phosphoglycerate dehydrogenase and related dehydrogenases
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20535: Phosphoglycerate dehydrogenase and related dehydrogenases
 
Xanthobacter autotrophicus Py2
Phosphoglycerate dehydrogenase and related dehydrogenases
COG1082
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3110: Sugar phosphate isomerases/epimerases
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_c15090: Sugar phosphate isomerases/epimerases
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20534: Sugar phosphate isomerases/epimerases
 
Xanthobacter autotrophicus Py2
Sugar phosphate isomerases/epimerases
 
CRON 2.
SMb20538
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -69
score = 5.47958
sequence = ACTAAGAAAATTTGCAAGAA

Gene: Atu3106: Sugar ABC transporter, substrate-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -129
score = 5.43477
sequence = ATAGCGCAAATTTGCAATAC

Gene: RHE_CH00073: Sugar ABC transporter, substrate-binding protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -129
score = 6.2044
sequence = ATAATGCAAATTTGCAAGAA

Gene: RL0082: Sugar ABC transporter, substrate-binding protein
*
Rhizobium sp. NGR234

Site:
position = -49
score = 5.71711
sequence = ACAATGCAAATTTGCAAGTG

Gene: NGR_c15130: Sugar ABC transporter, substrate-binding protein
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -129
score = 5.97256
sequence = TCAATGCAAATTTGCAAGAG

Gene: SMb20538: Sugar ABC transporter, substrate-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, substrate-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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