Regulog HrcA - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - HrcA
- By TF family - HrcA
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | 3 | 2 |
| Thauera sp. MZ1T | 3 | 2 |
| Dechloromonas aromatica RCB | 3 | 2 |
| Nitrosomonas europaea ATCC 19718 | 3 | 2 |
| Nitrosospira multiformis ATCC 25196 | 2 | 1 |
| Thiobacillus denitrificans | 3 | 2 |
| Chromobacterium violaceum ATCC 12472 | 3 | 2 |
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | 5 | 3 |
| Methylobacillus flagellatus KT | 3 | 2 |
| Methylotenera mobilis JLW8 | 3 | 2 |
| Methylophilales bacterium HTCC2181 | 3 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| rpoH |
*
Azoarcus sp. EbN1 Site: position = -54 score = 6.96387 sequence = TTAGCACTCCAACGCCATGAGTGCTAA Gene: ebA4241: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Thauera sp. MZ1T Site: position = -55 score = 7.05114 sequence = TTAGCACTCTCACGCCCCGAGTGCTAA Gene: Tmz1t_1062: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Dechloromonas aromatica RCB Site: position = -61 score = 7.08157 sequence = TTAGCACTCTTATGCAGCGAGTGCTAA Gene: Daro_3837: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Nitrosomonas europaea ATCC 19718 Site: position = -85 score = 6.99508 sequence = TTAGCACTCATGAACTAAGAGTGCTAG Gene: NE0584: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
Gene: Nmul_A2741: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Thiobacillus denitrificans Site: position = -52 score = 6.99845 sequence = TTAGCACTCCCAATGCGCGAGTGCTAA Gene: Tbd_0345: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -58 score = 6.81209 sequence = CTAGCACTCTCAATATTCGAGTGCTAA Gene: CV4206: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
Gene: NMB0712: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Laribacter hongkongensis HLHK9 Site: position = -55 score = 6.65395 sequence = TTATCACTCAACCAGGCCGAGTGCTAA Gene: LHK_00231: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Methylobacillus flagellatus KT Site: position = -55 score = 6.3191 sequence = CTAGCACACTCAAACAGTGAGTGCTAG Gene: Mfla_0702: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Methylotenera mobilis JLW8 Site: position = -56 score = 7.00953 sequence = CTAGCACTCTCGAACGTAGAGTGCTAA Gene: Mmol_1814: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Methylophilales bacterium HTCC2181 Site: position = -47 score = 7.12541 sequence = TTAGCACTCTATAGGATTGAGTGCTAA Gene: MB2181_02680: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
| CRON 2. | |||||||||||||
| groS |
*
Azoarcus sp. EbN1 Site: position = -115 score = 7.3516 sequence = TTAGCACTCGTTGGCAGTGAGTGCTAA Gene: ebB35: Heat shock protein 60 family co-chaperone GroES |
*
Thauera sp. MZ1T Site: position = -144 score = 7.47097 sequence = TTAGCACTCGTTGGCGTCGAGTGCTAA Gene: Tmz1t_1419: Heat shock protein 60 family co-chaperone GroES |
*
Dechloromonas aromatica RCB Site: position = -115 score = 7.44827 sequence = TTAGCACTCACCGGCGACGAGTGCTAA Gene: Daro_0425: Heat shock protein 60 family co-chaperone GroES |
*
Nitrosomonas europaea ATCC 19718 Site: position = -128 score = 7.36348 sequence = TTAGCACTCGTTGCTGTTGAGTGCTAA Gene: NE0027: Heat shock protein 60 family co-chaperone GroES |
*
Nitrosospira multiformis ATCC 25196 Site: position = -120 score = 7.28056 sequence = TTAGCACTCATTGGCATTGAGTGCTAA Gene: Nmul_A2345: Heat shock protein 60 family co-chaperone GroES |
*
Thiobacillus denitrificans Site: position = -102 score = 6.8201 sequence = TCAGCACTCTATGGCGGCGAGTGCTAA Gene: Tbd_0092: Heat shock protein 60 family co-chaperone GroES |
*
Chromobacterium violaceum ATCC 12472 Site: position = -94 score = 7.34972 sequence = TTAGCACTCGCAATGGTCGAGTGCTAA Gene: CV4015: Heat shock protein 60 family co-chaperone GroES |
Gene: NMB1973: Heat shock protein 60 family co-chaperone GroES |
*2
Laribacter hongkongensis HLHK9 Site: position = -97 score = 7.01636 sequence = TTAGCACTCGTGAAGCGGGAGTGCTAA Gene: LHK_01878: Heat shock protein 60 family co-chaperone GroES Site: position = -97 score = 6.91987 sequence = TTGGCACTCGTGAGTGATGAGTGCTAA Gene: LHK_00659: Heat shock protein 60 family co-chaperone GroES |
*
Methylobacillus flagellatus KT Site: position = -97 score = 7.27868 sequence = TTAGCACTCGATAGGGTTGAGTGCTAA Gene: Mfla_0365: Heat shock protein 60 family co-chaperone GroES |
*
Methylotenera mobilis JLW8 Site: position = -94 score = 6.9486 sequence = TTAGCAATCGAGGTGCGCGAGTGCTAA Gene: Mmol_0429: Heat shock protein 60 family co-chaperone GroES |
*
Methylophilales bacterium HTCC2181 Site: position = -91 score = 6.97407 sequence = TTAGCACTCTATCAAGTTGAGTGCTAA Gene: MB2181_06400: Heat shock protein 60 family co-chaperone GroES |
Heat shock protein 60 family co-chaperone GroES |
| groL |
Gene: ebA1185: Heat shock protein 60 family chaperone GroEL |
Gene: Tmz1t_1420: Heat shock protein 60 family chaperone GroEL |
Gene: Daro_0426: Heat shock protein 60 family chaperone GroEL |
Gene: NE0028: Heat shock protein 60 family chaperone GroEL |
Gene: Nmul_A2344: Heat shock protein 60 family chaperone GroEL |
Gene: Tbd_0091: Heat shock protein 60 family chaperone GroEL |
Gene: CV4014: Heat shock protein 60 family chaperone GroEL |
Gene: NMB1972: Heat shock protein 60 family chaperone GroEL |
2
Laribacter hongkongensis HLHK9 Gene: LHK_01877: Heat shock protein 60 family chaperone GroEL Gene: LHK_00660: Heat shock protein 60 family chaperone GroEL |
Gene: Mfla_0364: Heat shock protein 60 family chaperone GroEL |
Gene: Mmol_0428: Heat shock protein 60 family chaperone GroEL |
Gene: MB2181_06405: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |