Regulog FMN - Thermoanaerobacterales
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Thermoanaerobacterales
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Caldicellulosiruptor saccharolyticus DSM 8903 | 4 | 1 |
| Moorella thermoacetica ATCC 39073 | 3 | 1 |
| Thermoanaerobacter tengcongensis MB4 | 1 | 1 |
| Thermoanaerobacter ethanolicus X514 | 5 | 2 |
| Anaerocellum thermophilum DSM 6725 | 4 | 1 |
| Thermoanaerobacter italicus Ab9 | 5 | 2 |
| Carboxydothermus hydrogenoformans Z-2901 | 4 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| ribD |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -248 score = 114.94 sequence = GTCCATCCTTCGGGG... Gene: Csac_0794: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Moorella thermoacetica ATCC 39073 Site: position = -273 score = 115.07 sequence = ACGTCCTTCGGGGTT... Gene: Moth_0915: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Thermoanaerobacter ethanolicus X514 Site: position = -199 score = 113.69 sequence = AAAACCTTCAGGGAT... Gene: Teth514_0020: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Anaerocellum thermophilum DSM 6725 Site: position = -252 score = 114.52 sequence = GTCCATCCTTCGGGG... Gene: Athe_0564: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Thermoanaerobacter italicus Ab9 Site: position = -198 score = 113.69 sequence = AAAACCTTCAGGGAT... Gene: Thit_0021: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Carboxydothermus hydrogenoformans Z-2901 Site: position = -196 score = 119.85 sequence = TTACTACCTTCGGGG... Gene: CHY_1475: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: Csac_0793: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Moth_0916: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: Teth514_0021: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Athe_0563: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Thit_0022: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: CHY_1474: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: Csac_0792: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Moth_0917: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: Teth514_0022: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Athe_0562: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Thit_0023: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: CHY_1473: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: Csac_0791: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Moth_0918: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: Teth514_0023: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Athe_0561: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Thit_0024: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: CHY_1472: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 2. | ||||||||
| ribU |
Gene: Csac_1786: Substrate-specific component RibU of riboflavin ECF transporter |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -217 score = 121.29 sequence = AAAATCTTCGGGGCA... Gene: TTE0534: Substrate-specific component RibU of riboflavin ECF transporter |
*
Thermoanaerobacter ethanolicus X514 Site: position = -209 score = 117.48 sequence = TAAATCTTCGGGGCA... Gene: Teth514_0486: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: Athe_1221: Substrate-specific component RibU of riboflavin ECF transporter |
*
Thermoanaerobacter italicus Ab9 Site: position = -209 score = 120.11 sequence = TAAATCTTCGGGGCA... Gene: Thit_0536: Substrate-specific component RibU of riboflavin ECF transporter |
|
Substrate-specific component RibU of riboflavin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |