Regulog NiaR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | NiaR |
| Regulation mode: | repressor |
| Biological process: | NAD biosynthesis |
| Effector: | Niacin |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - NiaR
- By effector - Niacin
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 3 | 1 |
| Clostridium beijerincki NCIMB 8052 | 4 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 4 | 2 |
| Clostridium butyricum 5521 | 4 | 2 |
| Clostridium kluyveri DSM 555 | 4 | 2 |
| Clostridium novyi NT | 4 | 2 |
| Clostridium perfringens ATCC 13124 | ||
| Clostridium tetani E88 | 2 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| niaX |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = 8 score = 6.08818 sequence = TACTAGTGTATATACATGTGAT Gene: Cbei_1404: Substrate-specific component NiaX of predicted niacin ECF transporter |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -41 score = 5.99366 sequence = TACTAATGTATATACACTTAAC Gene: CBO2620: Substrate-specific component NiaX of predicted niacin ECF transporter |
*
Clostridium butyricum 5521 Site: position = -144 score = 6.81581 sequence = TACTAATGTATATACACTAGTA Gene: CBY_0041: Substrate-specific component NiaX of predicted niacin ECF transporter |
*
Clostridium kluyveri DSM 555 Site: position = -36 score = 6.51927 sequence = TACTGGTGTATATACATTTGTT Gene: CKL_1488: Substrate-specific component NiaX of predicted niacin ECF transporter |
*
Clostridium novyi NT Site: position = -42 score = 6.5344 sequence = TACTACTGTATATACAGTAGTA Gene: NT01CX_1651: Substrate-specific component NiaX of predicted niacin ECF transporter |
|
*
Clostridium tetani E88 Site: position = -29 score = 6.81581 sequence = TACTAGTGTATATACATTAGTA Gene: CTC01003: Substrate-specific component NiaX of predicted niacin ECF transporter |
Substrate-specific component NiaX of predicted niacin ECF transporter |
| CRON 2. | |||||||||
| nadA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -79 score = 6.0794 sequence = ATTTAATGTATATACACCTGTA Gene: CAC1025: Quinolinate synthetase (EC 4.1.99.-) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -50 score = 6.19092 sequence = CAATGGTGTATATACACCTGTA Gene: Cbei_0792: Quinolinate synthetase (EC 4.1.99.-) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -51 score = 6.21767 sequence = TATATATGTATATACACATGTA Gene: CBO1448: Quinolinate synthetase (EC 4.1.99.-) |
*
Clostridium butyricum 5521 Site: position = -46 score = 6.27705 sequence = AAAAGGTGTATATACACCTGTA Gene: CBY_3922: Quinolinate synthetase (EC 4.1.99.-) |
*
Clostridium kluyveri DSM 555 Site: position = -110 score = 6.39904 sequence = TACTGATGTATATACAGTAGAA Gene: CKL_0748: Quinolinate synthetase (EC 4.1.99.-) |
*
Clostridium novyi NT Site: position = -61 score = 5.917 sequence = TTAAGGTGTATATACACATGTG Gene: NT01CX_0090: Quinolinate synthetase (EC 4.1.99.-) |
Gene: CPF_0382: Quinolinate synthetase (EC 4.1.99.-) |
|
Quinolinate synthetase (EC 4.1.99.-) |
| nadB |
Gene: CAC1024: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Cbei_0793: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CBO1447A: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CBY_3921: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CKL_0749: L-aspartate oxidase (EC 1.4.3.16) |
Gene: NT01CX_0089: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CPF_0383: L-aspartate oxidase (EC 1.4.3.16) |
|
L-aspartate oxidase (EC 1.4.3.16) |
| nadC |
Gene: CAC1023: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Cbei_0794: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CBO1447: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CBY_3920: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CKL_0750: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: NT01CX_0088: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CPF_0384: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
|
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
| CRON 3. | |||||||||
| pncA |
Gene: CAC1778: Nicotinamidase (EC 3.5.1.19) |
Gene: Cbei_2077: Nicotinamidase (EC 3.5.1.19) |
Gene: CBO1134: Nicotinamidase (EC 3.5.1.19) |
Gene: CBY_1219: Nicotinamidase (EC 3.5.1.19) |
Gene: CKL_2731: Nicotinamidase (EC 3.5.1.19) |
Gene: NT01CX_2341: Nicotinamidase (EC 3.5.1.19) |
Gene: CPF_0569: Nicotinamidase (EC 3.5.1.19) |
*
Clostridium tetani E88 Site: position = -56 score = 6.07748 sequence = TTAAAATGTATATACAGATGTA Gene: CTC00699: Nicotinamidase (EC 3.5.1.19) |
Nicotinamidase (EC 3.5.1.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |