Regulog Glycine - Caulobacterales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Caulobacterales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 5 | 2 |
| Caulobacter segnis ATCC 21756 | 4 | 1 |
| Caulobacter sp. K31 | 7 | 2 |
| Phenylobacterium zucineum HLK1 | 4 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| omp |
*
Caulobacter crescentus CB15 Site: position = -377 score = 53.15 sequence = GACGTTGAACGCTGG... Site: position = -462 score = 52.19 sequence = AAGGCCTCTCGCGGG... Gene: CC3436: TonB-dependent receptor |
Gene: Cseg_0829: TonB-dependent receptor |
*
Caulobacter sp. K31 Site: position = -415 score = 45.45 sequence = GCGTCGAAACGCTGG... Gene: Caul_2543: TonB-dependent receptor |
|
TonB-dependent receptor |
| COG2355 |
|
|
Gene: Caul_2542: Dipeptidase |
|
Dipeptidase |
| CRON 2. | |||||
| gcvT |
*
Caulobacter crescentus CB15 Site: position = -260 score = 62.81 sequence = CTCGACCCTCGCGGG... Site: position = -165 score = 30.61 sequence = ACGCTGGAAAGCAGT... Gene: CC3355: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Caulobacter segnis ATCC 21756 Site: position = -145 score = 34.38 sequence = GCTGGAAAGAGGCTT... Site: position = -240 score = 61.31 sequence = TGACCCTCGCGGGAG... Gene: Cseg_0335: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Caulobacter sp. K31 Site: position = -157 score = 52.5 sequence = GTTTAGGAACGCTGG... Site: position = -245 score = 50.41 sequence = CTCGACCCACGCGGG... Gene: Caul_4387: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Phenylobacterium zucineum HLK1 Site: position = -173 score = 40.25 sequence = GCTGATGAACGCTGG... Site: position = -271 score = 42.36 sequence = GCCGACTCTCGCGGG... Gene: PHZ_c0592: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: CC3354: Glycine cleavage system H protein |
Gene: Cseg_0336: Glycine cleavage system H protein |
Gene: Caul_4386: Glycine cleavage system H protein |
Gene: PHZ_c0591: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| Caul_4385 |
|
|
Gene: Caul_4385: hypothetical protein |
|
hypothetical protein |
| gcvP |
2
Caulobacter crescentus CB15 Gene: CC3353: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) Gene: CC3352: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
2
Caulobacter segnis ATCC 21756 Gene: Cseg_0337: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) Gene: Cseg_0338: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
2
Caulobacter sp. K31 Gene: Caul_4384: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) Gene: Caul_4383: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
2
Phenylobacterium zucineum HLK1 Gene: PHZ_c0589: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) Gene: PHZ_c0590: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |