Regulog NrdR - Deinococcus-Thermus
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Deinococcus-Thermus |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Deinococcus-Thermus
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus deserti VCD115 | ||
| Deinococcus geothermalis DSM 11300 | 5 | 1 |
| Deinococcus radiodurans R1 | 2 | 2 |
| Thermus aquaticus Y51MC23 | ||
| Thermus thermophilus HB27 | 4 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| nrdJ |
|
|
*
Deinococcus radiodurans R1 Site: position = -25 score = 4.61387 sequence = ATACCATCCCTGGTAT Gene: DR2374: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Gene: TaqDRAFT_5060: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
*
Thermus thermophilus HB27 Site: position = -65 score = 4.60949 sequence = ACCCAACCGGTAGTAG Gene: TTC1930: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
| CRON 2. | ||||||
| achX |
|
*
Deinococcus geothermalis DSM 11300 Site: position = -357 score = 5.08293 sequence = ATACAACATTTAGTAT Gene: Dgeo_1772: Acyl-CoA hydrolase (EC 3.1.2.20) |
*
Deinococcus radiodurans R1 Site: position = -347 score = 4.81235 sequence = GTGCCACCTGTAGTAT Gene: DRB0106: Acyl-CoA hydrolase (EC 3.1.2.20) |
Gene: TaqDRAFT_3194: Acyl-CoA hydrolase (EC 3.1.2.20) |
*
Thermus thermophilus HB27 Site: position = -338 score = 5.05212 sequence = ATCCAACCTGTGGTAG Gene: TTP0160: Acyl-CoA hydrolase (EC 3.1.2.20) |
Acyl-CoA hydrolase (EC 3.1.2.20) |
| nrdI |
|
Gene: Dgeo_1773: Ribonucleotide reduction protein NrdI |
Gene: DRB0107: Ribonucleotide reduction protein NrdI |
|
|
Ribonucleotide reduction protein NrdI |
| nrdE |
|
Gene: Dgeo_1774: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: DRB0108: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
|
|
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdF |
|
Gene: Dgeo_1775: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Gene: DRB0109: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
|
|
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| trx |
|
Gene: Dgeo_1776: thioredoxin-related protein |
Gene: DRB0110: thioredoxin-related protein |
|
|
thioredoxin-related protein |
| nrdB |
|
|
|
Gene: TaqDRAFT_3195: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: TTP0161: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| nrdA |
|
|
|
Gene: TaqDRAFT_3196: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: TTP0162: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |