Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Planctomycetes

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Planctomycetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Blastopirellula marina DSM 3645 2 2
Gemmata obscuriglobus UQM 2246
Pirellula sp. 1 1 1
Pirellula staleyi DSM 6068 3 2
Planctomyces maris DSM 8797 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJ
*
Blastopirellula marina DSM 3645

Site:
position = -28
score = 3.49423
sequence = GCACCATATATTGACA

Site:
position = -60
score = 5.0121
sequence = GCACCATATATTGTGT

Gene: DSM3645_08982: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Gemmata obscuriglobus UQM 2246

Gene: GobsU_010100032454: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Pirellula sp. 1

Site:
position = -263
score = 4.47605
sequence = CGCCCACATGTAGTGC

Site:
position = -231
score = 4.34362
sequence = CCACTACCGGTAGTGA

Gene: RB12762: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Pirellula staleyi DSM 6068

Site:
position = -443
score = 4.88058
sequence = GCACAACCTGTTGTGC

Site:
position = -410
score = 3.66429
sequence = TCACAACTGGTTGATT

Site:
position = -218
score = 4.9642
sequence = CCACAATAGATGGTGT

Site:
position = -102
score = 4.07402
sequence = TCCCAACACGTTGGTT

Gene: Psta_0580: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Planctomyces maris DSM 8797
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
CRON 2.
nrdA
*
Blastopirellula marina DSM 3645

Site:
position = -374
score = 4.5147
sequence = CCACGATATATTGGGC

Site:
position = -298
score = 4.78177
sequence = CCACAGTATCTTGTGC

Site:
position = -266
score = 4.74848
sequence = GCACAATATGCTGTGG

Gene: DSM3645_25172: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Gemmata obscuriglobus UQM 2246
 
Pirellula sp. 1
*
Pirellula staleyi DSM 6068

Site:
position = -309
score = 3.75084
sequence = ACCCAATTAGTTGTGC

Site:
position = -341
score = 3.39513
sequence = TGACAATCCCTGGGGG

Gene: Psta_1278: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Planctomyces maris DSM 8797

Site:
position = -126
score = 4.47678
sequence = TCACTATTTGTGGGGC

Gene: PM8797T_04865: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Blastopirellula marina DSM 3645

Gene: DSM3645_25167: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Gemmata obscuriglobus UQM 2246
 
Pirellula sp. 1
 
Pirellula staleyi DSM 6068

Gene: Psta_1277: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Planctomyces maris DSM 8797

Gene: PM8797T_04860: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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