Regulog NarP - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | 7 | 2 |
| Moritella sp. PE36 | 35 | 12 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 49 | 16 |
| Aeromonas salmonicida subsp. salmonicida A449 | 49 | 15 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| nhaP |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -100 score = 4.409 sequence = TACTCATAAATAGGTA Gene: AHA_0431: Predicted Na+/H+ antiporter |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -101 score = 4.409 sequence = TACTCATAAATAGGTA Gene: ASA_3913: Predicted Na+/H+ antiporter |
|
Predicted Na+/H+ antiporter |
| CRON 2. | |||||||
| ompW |
Gene: Ping_0700: Outer membrane protein W precursor |
|
*
Moritella sp. PE36 Site: position = 6 score = 4.43397 sequence = TACTCATTAGTGAGTA Gene: PE36_21995: Outer membrane protein W precursor |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -107 score = 4.28499 sequence = TATCTATTTCTTGGTA Gene: AHA_3953: Outer membrane protein W precursor |
|
|
Outer membrane protein W precursor |
| CRON 3. | |||||||
| napF2 |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -28 score = 4.63664 sequence = TAACCCCTAATAGGTA Gene: AHA_0251: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -22 score = 4.63664 sequence = TAACCCCTAATAGGTA Gene: ASA_4147: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
|
Periplasmic nitrate reductase, ferredoxin-type protein NapF |
| CRON 4. | |||||||
| pckA |
Gene: Ping_0093: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: PCNPT3_01835: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: PE36_23902: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -66 score = 4.65483 sequence = TACCACCTAAGTGATA Gene: AHA_0565: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -66 score = 4.65483 sequence = TACCACCTAAGTGATA Gene: ASA_3771: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
2
Tolumonas auensis DSM 9187 Gene: Tola_0419: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) Gene: Tola_0416: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
| CRON 5. | |||||||
| dcuB |
|
Gene: PCNPT3_10073: C4-dicarboxylate transporter |
Gene: PE36_18980: C4-dicarboxylate transporter |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -90 score = 4.65189 sequence = TAACCCTTTAGGGCTA Gene: AHA_1485: C4-dicarboxylate transporter |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 4.65189 sequence = TAACCCTTTAGGGCTA Gene: ASA_2882: C4-dicarboxylate transporter |
|
C4-dicarboxylate transporter |
| CRON 6. | |||||||
| focA |
Gene: Ping_3306: Formate transporter, FNT family |
|
Gene: PE36_18484: Formate transporter, FNT family |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -285 score = 4.66004 sequence = TACCTCTTAGGGGGTT Gene: AHA_1942: Formate transporter, FNT family |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -286 score = 4.37894 sequence = TACCCCTAAGGGGATT Gene: ASA_2351: Formate transporter, FNT family |
Gene: Tola_0882: Formate transporter, FNT family |
Formate transporter, FNT family |
| pflB |
Gene: Ping_3307: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: PCNPT3_03056: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: PE36_18489: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: AHA_1941: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: ASA_2352: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: Tola_0881: Pyruvate formate-lyase (EC 2.3.1.54) |
Pyruvate formate-lyase (EC 2.3.1.54) |
| CRON 7. | |||||||
| torY |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -56 score = 4.75311 sequence = TACCTCTCAATGGATA Site: position = -42 score = 4.39747 sequence = TACTACTATATTGGTA Gene: AHA_4048: Biotin sulfoxide reductase, cytochrome c-type |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -42 score = 4.39747 sequence = TACTACTATATTGGTA Site: position = -56 score = 4.07177 sequence = TACCTCTCTCTAGCTA Gene: ASA_0266: Biotin sulfoxide reductase, cytochrome c-type |
|
Biotin sulfoxide reductase, cytochrome c-type |
| torZ |
|
|
|
Gene: AHA_4049: Biotin sulfoxide reductase |
Gene: ASA_0265: Biotin sulfoxide reductase |
|
Biotin sulfoxide reductase |
| CRON 8. | |||||||
| hybO |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -205 score = 4.94696 sequence = TACCCCCTAGTGGGTA Gene: AHA_2526: Hydrogenase II, small subunit (EC 1.12.99.6) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -206 score = 4.83531 sequence = TACCCCCTTGTGGATA Gene: ASA_1788: Hydrogenase II, small subunit (EC 1.12.99.6) |
|
Hydrogenase II, small subunit (EC 1.12.99.6) |
| hybA |
|
|
|
Gene: AHA_2525: Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6) |
Gene: ASA_1789: Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6) |
|
Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6) |
| hybB |
|
|
|
Gene: AHA_2524: Hydrogenase II, cytochrome b type component (EC 1.12.99.6) |
Gene: ASA_1790: Hydrogenase II, cytochrome b type component (EC 1.12.99.6) |
|
Hydrogenase II, cytochrome b type component (EC 1.12.99.6) |
| hybC |
|
|
|
Gene: AHA_2523: Hydrogenase II, large subunit (EC 1.12.99.6) |
Gene: ASA_1791: Hydrogenase II, large subunit (EC 1.12.99.6) |
|
Hydrogenase II, large subunit (EC 1.12.99.6) |
| hybD |
|
|
|
Gene: AHA_2522: Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6) |
Gene: ASA_1792: Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6) |
|
Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6) |
| hybE |
|
|
|
Gene: AHA_2521: Hydrogenase II, maturation chaperone (EC 1.12.99.6) |
Gene: ASA_1793: Hydrogenase II, maturation chaperone (EC 1.12.99.6) |
|
Hydrogenase II, maturation chaperone (EC 1.12.99.6) |
| CRON 9. | |||||||
| napF |
Gene: Ping_2176: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Psychromonas sp. CNPT3 Site: position = -85 score = 4.05194 sequence = TTACCCTAAAGAGGTA Gene: PCNPT3_07890: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Moritella sp. PE36 Site: position = -122 score = 4.71818 sequence = TACCCATTAGTGAGTA Gene: PE36_12557: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -125 score = 4.19885 sequence = TATCTCCCTGGTGGTA Gene: AHA_1584: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -82 score = 4.19885 sequence = TATCTCCCTGGTGGTA Gene: ASA_2773: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
|
Periplasmic nitrate reductase, ferredoxin-type protein NapF |
| napD |
Gene: Ping_2175: Periplasmic nitrate reductase component NapD |
Gene: PCNPT3_07885: Periplasmic nitrate reductase component NapD |
Gene: PE36_12552: Periplasmic nitrate reductase component NapD |
Gene: AHA_1585: Periplasmic nitrate reductase component NapD |
Gene: ASA_2772: Periplasmic nitrate reductase component NapD |
|
Periplasmic nitrate reductase component NapD |
| napA |
Gene: Ping_2174: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: PCNPT3_07880: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
*2
Moritella sp. PE36 Gene: PE36_12547: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Site: position = -162 score = 4.04601 sequence = TACCTTGTTGGTGGTA Site: position = -148 score = 4.29397 sequence = TATCACATAAGTGGTA Gene: PE36_12527: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: AHA_1586: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: ASA_2771: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
|
Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
| napG |
|
|
|
Gene: AHA_1587: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
Gene: ASA_2770: Periplasmic nitrate reductase, ferredoxin-type protein NapG |
|
Periplasmic nitrate reductase, ferredoxin-type protein NapG |
| napH |
|
|
|
Gene: AHA_1588: Periplasmic nitrate reductase, polyferredoxin NapH |
Gene: ASA_2769: Periplasmic nitrate reductase, polyferredoxin NapH |
|
Periplasmic nitrate reductase, polyferredoxin NapH |
| napB |
Gene: Ping_2173: Nitrate reductase cytochrome c550-type subunit |
Gene: PCNPT3_07875: Nitrate reductase cytochrome c550-type subunit |
2
Moritella sp. PE36 Gene: PE36_12542: Nitrate reductase cytochrome c550-type subunit Gene: PE36_12522: Nitrate reductase cytochrome c550-type subunit |
Gene: AHA_1589: Nitrate reductase cytochrome c550-type subunit |
Gene: ASA_2768: Nitrate reductase cytochrome c550-type subunit |
|
Nitrate reductase cytochrome c550-type subunit |
| napC |
Gene: Ping_2172: Cytochrome c-type protein NapC |
Gene: PCNPT3_07870: Cytochrome c-type protein NapC |
2
Moritella sp. PE36 Gene: PE36_12537: Cytochrome c-type protein NapC Gene: PE36_12517: Cytochrome c-type protein NapC |
Gene: AHA_1590: Cytochrome c-type protein NapC |
Gene: ASA_2767: Cytochrome c-type protein NapC |
|
Cytochrome c-type protein NapC |
| CRON 10. | |||||||
| frdA |
Gene: Ping_3278: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: PCNPT3_03111: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Moritella sp. PE36 Site: position = -50 score = 4.84027 sequence = TACCTCTTAGTGGTTA Gene: PE36_18239: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -19 score = 4.28731 sequence = TATCCCTAAGGAGGCA Site: position = -315 score = 4.04297 sequence = TAATTCTTATTAAATA Gene: AHA_3208: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -19 score = 4.28731 sequence = TATCCCTAAGGAGGCA Site: position = -315 score = 4.04297 sequence = TAATTCTTATTAAATA Gene: ASA_1105: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: Tola_2490: Fumarate reductase subunit A (EC 1.3.5.4) |
Fumarate reductase subunit A (EC 1.3.5.4) |
| frdB |
Gene: Ping_3279: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: PCNPT3_03106: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: PE36_18234: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: AHA_3209: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: ASA_1104: Fumarate reductase subunit B (EC 1.3.5.4) |
Gene: Tola_2491: Fumarate reductase subunit B (EC 1.3.5.4) |
Fumarate reductase subunit B (EC 1.3.5.4) |
| frdC |
Gene: Ping_3280: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: PCNPT3_03101: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: PE36_18229: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: AHA_3210: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: ASA_1103: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: Tola_2492: Fumarate reductase subunit C (EC 1.3.5.4) |
Fumarate reductase subunit C (EC 1.3.5.4) |
| frdD |
Gene: Ping_3281: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: PCNPT3_03096: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: PE36_18224: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: AHA_3211: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: ASA_1102: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: Tola_2493: Fumarate reductase subunit D (EC 1.3.5.4) |
Fumarate reductase subunit D (EC 1.3.5.4) |
| CRON 11. | |||||||
| adhB |
|
Gene: PCNPT3_05374: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Moritella sp. PE36 Site: position = -123 score = 4.11759 sequence = TACCTCAAAGTGGTTA Gene: PE36_21504: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -33 score = 4.79621 sequence = TACCACTTAATGGCTA Gene: AHA_1463: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -33 score = 4.79621 sequence = TACCACTTAATGGCTA Gene: ASA_2902: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
|
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
| CRON 12. | |||||||
| nqrA |
Gene: Ping_0746: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
Gene: PCNPT3_10850: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
*
Moritella sp. PE36 Site: position = -83 score = 4.43587 sequence = TACTCATTTTTAGGTA Gene: PE36_22040: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -297 score = 4.75548 sequence = TACCTATTTTTGGGTA Gene: AHA_1136: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -296 score = 4.7835 sequence = TACCCATTTTGGGGTA Gene: ASA_3199: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
Gene: Tola_2993: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) |
| nqrB |
Gene: Ping_0747: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Gene: PCNPT3_10845: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Gene: PE36_22035: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Gene: AHA_1137: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Gene: ASA_3198: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Gene: Tola_2994: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) |
| nqrC |
Gene: Ping_0748: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Gene: PCNPT3_10840: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Gene: PE36_22030: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Gene: AHA_1138: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Gene: ASA_3197: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Gene: Tola_2995: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) |
| nqrD |
Gene: Ping_0749: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Gene: PCNPT3_10835: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Gene: PE36_22025: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Gene: AHA_1139: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Gene: ASA_3196: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Gene: Tola_2996: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) |
| nqrE |
Gene: Ping_0750: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Gene: PCNPT3_10830: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Gene: PE36_22020: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Gene: AHA_1140: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Gene: ASA_3195: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Gene: Tola_2997: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) |
| nqrF |
Gene: Ping_0751: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Gene: PCNPT3_10825: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Gene: PE36_22015: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Gene: AHA_1141: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Gene: ASA_3194: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Gene: Tola_2998: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
| CRON 13. | |||||||
| PE36_12567 |
|
|
*
Moritella sp. PE36 Site: position = -118 score = 3.44876 sequence = TAATCATTTCTGATTA Gene: PE36_12567: hypothetical protein |
|
|
|
hypothetical protein |
| narQ |
|
*
Psychromonas sp. CNPT3 Site: position = -122 score = 3.87471 sequence = TACCACTAATGTAGCA Gene: PCNPT3_07900: Nitrate/nitrite sensor protein (EC 2.7.3.-) |
Gene: PE36_12572: Nitrate/nitrite sensor protein (EC 2.7.3.-) |
Gene: AHA_1582: Nitrate/nitrite sensor protein (EC 2.7.3.-) |
Gene: ASA_2775: Nitrate/nitrite sensor protein (EC 2.7.3.-) |
|
Nitrate/nitrite sensor protein (EC 2.7.3.-) |
| narP |
|
Gene: PCNPT3_07905: Nitrate/nitrite response regulator protein |
Gene: PE36_12577: Nitrate/nitrite response regulator protein |
Gene: AHA_1581: Nitrate/nitrite response regulator protein |
Gene: ASA_2776: Nitrate/nitrite response regulator protein |
|
Nitrate/nitrite response regulator protein |
| CRON 14. | |||||||
| nirB |
|
Gene: PCNPT3_01795: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Moritella sp. PE36 Site: position = -54 score = 4.51718 sequence = TATCTCTTAAGTAATA Gene: PE36_10598: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -115 score = 4.3917 sequence = TACCTATTTATGTATA Site: position = -80 score = 4.68783 sequence = TACCCCTGAGGGGATA Gene: AHA_4118: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -148 score = 4.3917 sequence = TACCTATTTATGTATA Site: position = -113 score = 4.61717 sequence = TACCCCTGAGGAGATA Gene: ASA_0196: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: Tola_0502: Nitrite reductase large subunit (EC 1.7.1.4) |
Nitrite reductase large subunit (EC 1.7.1.4) |
| ASA_0195 |
|
|
|
|
Gene: ASA_0195: Hypothetical protein |
|
Hypothetical protein |
| nirD |
|
Gene: PCNPT3_01800: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: PE36_10603: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: AHA_4119: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: ASA_0194: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: Tola_0501: Nitrite reductase small subunit (EC 1.7.1.4) |
Nitrite reductase small subunit (EC 1.7.1.4) |
| nirC |
|
Gene: PCNPT3_01805: Nitrite transporter, FNT family |
Gene: PE36_10608: Nitrite transporter, FNT family |
Gene: AHA_4120: Nitrite transporter, FNT family |
Gene: ASA_0193: Nitrite transporter, FNT family |
Gene: Tola_0500: Nitrite transporter, FNT family |
Nitrite transporter, FNT family |
| cysG |
|
|
|
Gene: AHA_4121: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: ASA_0192: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| CRON 15. | |||||||
| nrfA |
|
|
*
Moritella sp. PE36 Site: position = -171 score = 4.10247 sequence = TATTTATATATAGGTA Site: position = -259 score = 4.58124 sequence = TACTTATTTGGGGATA Gene: PE36_10173: Nitrite reductase, cytochrome c(552) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -160 score = 4.52863 sequence = TACCCATTTGGTAATA Gene: AHA_2464: Nitrite reductase, cytochrome c(552) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -159 score = 4.52863 sequence = TACCCATTTGGTAATA Gene: ASA_2321: Nitrite reductase, cytochrome c(552) |
|
Nitrite reductase, cytochrome c(552) |
| nrfB |
|
|
*
Moritella sp. PE36 Site: position = -258 score = 4.34913 sequence = TAACTCGTTGTAGGTA Gene: PE36_10178: Cytochrome c-type protein NrfB precursor |
2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2465: Cytochrome c-type protein NrfB precursor Gene: AHA_2762: Cytochrome c-type protein NrfB precursor |
Gene: ASA_2322: Cytochrome c-type protein NrfB precursor |
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Cytochrome c-type protein NrfB precursor |
| nrfC |
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Gene: PE36_10183: Nitrite reductase, Fe-S center subunit |
2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2761: Nitrite reductase, Fe-S center subunit Gene: AHA_2466: Nitrite reductase, Fe-S center subunit |
Gene: ASA_2323: Nitrite reductase, Fe-S center subunit |
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Nitrite reductase, Fe-S center subunit |
| nrfD |
|
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Gene: PE36_10188: Nitrite reductase, NrfD component |
2
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_2760: Nitrite reductase, NrfD component Gene: AHA_2467: Nitrite reductase, NrfD component |
Gene: ASA_2324: Nitrite reductase, NrfD component |
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Nitrite reductase, NrfD component |
| nrfE |
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|
|
Gene: AHA_2468: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: ASA_2325: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
| nrfF |
|
|
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Gene: AHA_2469: Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly |
Gene: ASA_2326: Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly |
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Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly |
| nrfG |
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|
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Gene: AHA_2470: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG |
Gene: ASA_2327: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG |
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfG |
| CRON 16. | |||||||
| dcuC |
|
Gene: PCNPT3_03596: C4-dicarboxylate transporter |
*
Moritella sp. PE36 Site: position = -101 score = 3.6814 sequence = CTCCCCTTTTTGGGTA Gene: PE36_10848: C4-dicarboxylate transporter |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -121 score = 4.97419 sequence = TACCCCTTATTGGATA Gene: AHA_1917: C4-dicarboxylate transporter |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -122 score = 4.90352 sequence = TACCCCTTATTAGATA Gene: ASA_2368: C4-dicarboxylate transporter |
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C4-dicarboxylate transporter |
| CRON 17. | |||||||
| pdhR |
Gene: Ping_2928: Pyruvate utilization transcriptional regulator PdhR, GntR family |
Gene: PCNPT3_04354: Pyruvate utilization transcriptional regulator PdhR, GntR family |
*
Moritella sp. PE36 Site: position = -185 score = 4.70991 sequence = TATCACTTTGGAGGTA Gene: PE36_00409: Pyruvate utilization transcriptional regulator PdhR, GntR family |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -124 score = 4.76329 sequence = TACCCCTTAAGTGGCA Gene: AHA_3864: Pyruvate utilization transcriptional regulator PdhR, GntR family |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -124 score = 4.76329 sequence = TACCCCTTAAGTGGCA Gene: ASA_0418: Pyruvate utilization transcriptional regulator PdhR, GntR family |
Gene: Tola_2577: Pyruvate utilization transcriptional regulator PdhR, GntR family |
Pyruvate utilization transcriptional regulator PdhR, GntR family |
| aceE |
Gene: Ping_2927: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: PCNPT3_04359: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: PE36_00414: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: AHA_3863: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: ASA_0419: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Gene: Tola_2576: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
Pyruvate dehydrogenase E1 component (EC 1.2.4.1) |
| aceF |
Gene: Ping_2926: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PCNPT3_04364: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: PE36_00419: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: AHA_3862: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: ASA_0420: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Gene: Tola_2575: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
| lpdA |
Gene: Ping_2925: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Gene: PCNPT3_04369: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Gene: PE36_00424: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Gene: AHA_3861: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Gene: ASA_0421: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Gene: Tola_2574: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |