Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Aeromonas hydrophila subsp. hydrophila ATCC 7966

Properties
Regulator type: Transcription factor
TF locus tag: AHA_1581
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Psychromonadaceae/Aeromonadales
Statistics of regulated genes:
- Genes 49
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 53 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -160
Score: 4.5
Sequence: TACCCATTTGGTAATA
Locus tag: AHA_2464
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
Locus tag: AHA_2465
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: AHA_2466
Name: nrfC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: AHA_2467
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: AHA_2468
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: AHA_2469
Name: nrfF
Funciton: Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly
Locus tag: AHA_2470
Name: nrfG
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfG
nrfA
Nitrite reductase, cytochrome c(552)
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
Nitrite reductase, Fe-S center subunit
nrfD
Nitrite reductase, NrfD component
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
nrfF
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly
nrfG
Nitrite reductase, cytochrome c-type heme lyase subunit nrfG

Position: -56
Score: 4.8
Sequence: TACCTCTCAATGGATA
Position: -42
Score: 4.4
Sequence: TACTACTATATTGGTA
Locus tag: AHA_4048
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: AHA_4049
Name: torZ
Funciton: Biotin sulfoxide reductase
torY
Biotin sulfoxide reductase, cytochrome c-type
torZ
Biotin sulfoxide reductase

Position: -285
Score: 4.7
Sequence: TACCTCTTAGGGGGTT
Locus tag: AHA_1942
Name: focA
Funciton: Formate transporter, FNT family
Locus tag: AHA_1941
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
focA
Formate transporter, FNT family
pflB
Pyruvate formate-lyase (EC 2.3.1.54)

Position: -90
Score: 4.7
Sequence: TAACCCTTTAGGGCTA
Locus tag: AHA_1485
Name: dcuB
Funciton: C4-dicarboxylate transporter
dcuB
C4-dicarboxylate transporter

Position: -107
Score: 4.3
Sequence: TATCTATTTCTTGGTA
Locus tag: AHA_3953
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -115
Score: 4.4
Sequence: TACCTATTTATGTATA
Position: -80
Score: 4.7
Sequence: TACCCCTGAGGGGATA
Locus tag: AHA_4118
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: AHA_4119
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: AHA_4120
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: AHA_4121
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
nirC
Nitrite transporter, FNT family
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)

Position: -28
Score: 4.6
Sequence: TAACCCCTAATAGGTA
Locus tag: AHA_0251
Name: napF2
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
napF2
Periplasmic nitrate reductase, ferredoxin-type protein NapF

Position: -100
Score: 4.4
Sequence: TACTCATAAATAGGTA
Locus tag: AHA_0431
Name: nhaP
Funciton: Predicted Na+/H+ antiporter
nhaP
Predicted Na+/H+ antiporter

Position: -125
Score: 4.2
Sequence: TATCTCCCTGGTGGTA
Locus tag: AHA_1584
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: AHA_1585
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: AHA_1586
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: AHA_1587
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: AHA_1588
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: AHA_1589
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: AHA_1590
Name: napC
Funciton: Cytochrome c-type protein NapC
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Periplasmic nitrate reductase, polyferredoxin NapH
napB
Nitrate reductase cytochrome c550-type subunit
napC
Cytochrome c-type protein NapC

Position: -33
Score: 4.8
Sequence: TACCACTTAATGGCTA
Locus tag: AHA_1463
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)

Position: -66
Score: 4.7
Sequence: TACCACCTAAGTGATA
Locus tag: AHA_0565
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)

Position: -121
Score: 5
Sequence: TACCCCTTATTGGATA
Locus tag: AHA_1917
Name: dcuC
Funciton: C4-dicarboxylate transporter
dcuC
C4-dicarboxylate transporter

Position: -124
Score: 4.8
Sequence: TACCCCTTAAGTGGCA
Locus tag: AHA_3864
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: AHA_3863
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: AHA_3862
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: AHA_3861
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

Position: -297
Score: 4.8
Sequence: TACCTATTTTTGGGTA
Locus tag: AHA_1136
Name: nqrA
Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: AHA_1137
Name: nqrB
Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: AHA_1138
Name: nqrC
Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: AHA_1139
Name: nqrD
Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: AHA_1140
Name: nqrE
Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: AHA_1141
Name: nqrF
Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
nqrA
Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
nqrB
Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
nqrC
Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
nqrD
Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
nqrE
Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
nqrF
Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)

Position: -205
Score: 4.9
Sequence: TACCCCCTAGTGGGTA
Locus tag: AHA_2526
Name: hybO
Funciton: Hydrogenase II, small subunit (EC 1.12.99.6)
Locus tag: AHA_2525
Name: hybA
Funciton: Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6)
Locus tag: AHA_2524
Name: hybB
Funciton: Hydrogenase II, cytochrome b type component (EC 1.12.99.6)
Locus tag: AHA_2523
Name: hybC
Funciton: Hydrogenase II, large subunit (EC 1.12.99.6)
Locus tag: AHA_2522
Name: hybD
Funciton: Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6)
Locus tag: AHA_2521
Name: hybE
Funciton: Hydrogenase II, maturation chaperone (EC 1.12.99.6)
hybO
Hydrogenase II, small subunit (EC 1.12.99.6)
hybA
Hydrogenase II, FeS ferredoxin-type component (EC 1.12.99.6)
hybB
Hydrogenase II, cytochrome b type component (EC 1.12.99.6)
hybC
Hydrogenase II, large subunit (EC 1.12.99.6)
hybD
Hydrogenase II, predicted maturation peptidase (EC 1.12.99.6)
hybE
Hydrogenase II, maturation chaperone (EC 1.12.99.6)

Position: -315
Score: 4
Sequence: TAATTCTTATTAAATA
Position: -19
Score: 4.3
Sequence: TATCCCTAAGGAGGCA
Locus tag: AHA_3208
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: AHA_3209
Name: frdB
Funciton: Fumarate reductase subunit B (EC 1.3.5.4)
Locus tag: AHA_3210
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: AHA_3211
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
frdB
Fumarate reductase subunit B (EC 1.3.5.4)
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD