Regulog TPP - Deinococcus-Thermus

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Deinococcus-Thermus

Member of regulog collections

By taxonomy - Deinococcus-Thermus
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Deinococcus radiodurans R1	6	2
Deinococcus geothermalis DSM 11300	8	2
Deinococcus deserti VCD115	13	2
Thermus thermophilus HB27	9	2
Thermus aquaticus Y51MC23	8	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
thiE	Deinococcus radiodurans R1 Gene: DRA0174: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1923: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Deinococcus deserti VCD115 Gene: Deide_04520: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	* Thermus thermophilus HB27 Site: position = -179 score = 78.35 sequence = GGGCAGGCTAGGGGT... Gene: TTC0315: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	* Thermus aquaticus Y51MC23 Site: position = -177 score = 83.56 sequence = CTGCAGGCTAGGGGT... Gene: TaqDRAFT_3299: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiS	Deinococcus radiodurans R1 Gene: DRA0173: Sulfur carrier protein ThiS	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1922: Sulfur carrier protein ThiS	Deinococcus deserti VCD115 Gene: Deide_04525: Sulfur carrier protein ThiS	Thermus thermophilus HB27 Gene: TTC0316: Sulfur carrier protein ThiS	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3300: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Deinococcus radiodurans R1 Gene: DRA0172: Thiazole biosynthesis protein ThiG	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1921: Thiazole biosynthesis protein ThiG	Deinococcus deserti VCD115 Gene: Deide_04530: Thiazole biosynthesis protein ThiG	Thermus thermophilus HB27 Gene: TTC0317: Thiazole biosynthesis protein ThiG	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3301: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiO	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1920: Glycine oxidase ThiO (EC 1.4.3.19)	Deinococcus deserti VCD115 Gene: Deide_04540: Glycine oxidase ThiO (EC 1.4.3.19)	Thermus thermophilus HB27 Gene: TTC0318: Glycine oxidase ThiO (EC 1.4.3.19)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3302: Glycine oxidase ThiO (EC 1.4.3.19)	Glycine oxidase ThiO (EC 1.4.3.19)
thiC	* Deinococcus radiodurans R1 Site: position = -325 score = 57.02 sequence = GCATCGTCAACAGGG... Gene: DRA0175: Thiamin biosynthesis protein ThiC	* Deinococcus geothermalis DSM 11300 Site: position = -269 score = 60.04 sequence = GGGCAGTCACCAGGG... Gene: Dgeo_1924: Thiamin biosynthesis protein ThiC	* Deinococcus deserti VCD115 Site: position = -352 score = 71.1 sequence = AGCGTCACCAGGGGT... Gene: Deide_04510: Thiamin biosynthesis protein ThiC	Thermus thermophilus HB27 Gene: TTC0319: Thiamin biosynthesis protein ThiC	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3303: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
niaP	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300	Deinococcus deserti VCD115	Thermus thermophilus HB27 Gene: TTC0320: Thiamin transporter, NiaP family	Thermus aquaticus Y51MC23	Thiamin transporter, NiaP family
thiD	Deinococcus radiodurans R1 Gene: DRA0171: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1919: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Deinococcus deserti VCD115 Gene: Deide_04550: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Thermus thermophilus HB27 Gene: TTC0321: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_3304: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Phosphomethylpyrimidine kinase (EC 2.7.4.7)

CRON 2.
thiB	* Deinococcus radiodurans R1 Site: position = -124 score = 51.24 sequence = CGCGTCACCGGGGGT... Gene: DR0262: Thiamin ABC transporter, substrate-binding component	* Deinococcus geothermalis DSM 11300 Site: position = -170 score = 42.22 sequence = CGCGTCACCGGGGGT... Gene: Dgeo_1933: Thiamin ABC transporter, substrate-binding component	* Deinococcus deserti VCD115 Site: position = -144 score = 61.69 sequence = TGCGTCACCGGGGGT... Gene: Deide_15830: Thiamin ABC transporter, substrate-binding component	* Thermus thermophilus HB27 Site: position = -117 score = 66.72 sequence = AGGCCGTCACCGGGG... Gene: TTC1456: Thiamin ABC transporter, substrate-binding component	* Thermus aquaticus Y51MC23 Site: position = -114 score = 71.03 sequence = GGCGTCACCGGGGGT... Gene: TaqDRAFT_4918: Thiamin ABC transporter, substrate-binding component	Thiamin ABC transporter, substrate-binding component
Deide_15840	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300	Deinococcus deserti VCD115 Gene: Deide_15840: Putative nuclease	Thermus thermophilus HB27	Thermus aquaticus Y51MC23	Putative nuclease
thiP	Deinococcus radiodurans R1 Gene: DR2488: Thiamin ABC transporter, permease protein	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1934: Thiamin ABC transporter, permease protein	Deinococcus deserti VCD115 Gene: Deide_15850: Thiamin ABC transporter, permease protein	Thermus thermophilus HB27 Gene: TTC1455: Thiamin ABC transporter, permease protein	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4919: Thiamin ABC transporter, permease protein	Thiamin ABC transporter, permease protein
thiQ2	Deinococcus radiodurans R1 Gene: DR0062: Thiamin ABC transporter, ATP-binding protein	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1938: Thiamin ABC transporter, ATP-binding protein	Deinococcus deserti VCD115 Gene: Deide_15860: Thiamin ABC transporter, ATP-binding protein	Thermus thermophilus HB27 Gene: TTC1059: Thiamin ABC transporter, ATP-binding protein	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5099: Thiamin ABC transporter, ATP-binding protein	Thiamin ABC transporter, ATP-binding protein
Deide_15870	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300	Deinococcus deserti VCD115 Gene: Deide_15870: Conserved hypothetical protein, precursor	Thermus thermophilus HB27	Thermus aquaticus Y51MC23	Conserved hypothetical protein, precursor
DR1733	Deinococcus radiodurans R1 Gene: DR1733: Conserved hypothetical protein	Deinococcus geothermalis DSM 11300	Deinococcus deserti VCD115 Gene: Deide_15880: Conserved hypothetical protein	Thermus thermophilus HB27	Thermus aquaticus Y51MC23	Conserved hypothetical protein
thiN	Deinococcus radiodurans R1 Gene: DR0552: Thiamin pyrophosphokinase (EC 2.7.6.2)	Deinococcus geothermalis DSM 11300	Deinococcus deserti VCD115 Gene: Deide_15890: Thiamin pyrophosphokinase (EC 2.7.6.2)	Thermus thermophilus HB27 Gene: TTC1060: Thiamin pyrophosphokinase (EC 2.7.6.2)	Thermus aquaticus Y51MC23	Thiamin pyrophosphokinase (EC 2.7.6.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Deinococcus-Thermus

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --