Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1 6 2
Deinococcus geothermalis DSM 11300 8 2
Deinococcus deserti VCD115 13 2
Thermus thermophilus HB27 9 2
Thermus aquaticus Y51MC23 8 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiE
 
Deinococcus radiodurans R1

Gene: DRA0174: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1923: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Deinococcus deserti VCD115

Gene: Deide_04520: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
*
Thermus thermophilus HB27

Site:
position = -179
score = 78.35
sequence = GGGCAGGCTAGGGGT...

Gene: TTC0315: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
*
Thermus aquaticus Y51MC23

Site:
position = -177
score = 83.56
sequence = CTGCAGGCTAGGGGT...

Gene: TaqDRAFT_3299: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiS
 
Deinococcus radiodurans R1

Gene: DRA0173: Sulfur carrier protein ThiS
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1922: Sulfur carrier protein ThiS
 
Deinococcus deserti VCD115

Gene: Deide_04525: Sulfur carrier protein ThiS
 
Thermus thermophilus HB27

Gene: TTC0316: Sulfur carrier protein ThiS
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3300: Sulfur carrier protein ThiS
Sulfur carrier protein ThiS
thiG
 
Deinococcus radiodurans R1

Gene: DRA0172: Thiazole biosynthesis protein ThiG
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1921: Thiazole biosynthesis protein ThiG
 
Deinococcus deserti VCD115

Gene: Deide_04530: Thiazole biosynthesis protein ThiG
 
Thermus thermophilus HB27

Gene: TTC0317: Thiazole biosynthesis protein ThiG
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3301: Thiazole biosynthesis protein ThiG
Thiazole biosynthesis protein ThiG
thiO
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1920: Glycine oxidase ThiO (EC 1.4.3.19)
 
Deinococcus deserti VCD115

Gene: Deide_04540: Glycine oxidase ThiO (EC 1.4.3.19)
 
Thermus thermophilus HB27

Gene: TTC0318: Glycine oxidase ThiO (EC 1.4.3.19)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3302: Glycine oxidase ThiO (EC 1.4.3.19)
Glycine oxidase ThiO (EC 1.4.3.19)
thiC
*
Deinococcus radiodurans R1

Site:
position = -325
score = 57.02
sequence = GCATCGTCAACAGGG...

Gene: DRA0175: Thiamin biosynthesis protein ThiC
*
Deinococcus geothermalis DSM 11300

Site:
position = -269
score = 60.04
sequence = GGGCAGTCACCAGGG...

Gene: Dgeo_1924: Thiamin biosynthesis protein ThiC
*
Deinococcus deserti VCD115

Site:
position = -352
score = 71.1
sequence = AGCGTCACCAGGGGT...

Gene: Deide_04510: Thiamin biosynthesis protein ThiC
 
Thermus thermophilus HB27

Gene: TTC0319: Thiamin biosynthesis protein ThiC
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3303: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
niaP
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115
 
Thermus thermophilus HB27

Gene: TTC0320: Thiamin transporter, NiaP family
 
Thermus aquaticus Y51MC23
Thiamin transporter, NiaP family
thiD
 
Deinococcus radiodurans R1

Gene: DRA0171: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1919: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Deinococcus deserti VCD115

Gene: Deide_04550: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Thermus thermophilus HB27

Gene: TTC0321: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3304: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
CRON 2.
thiB
*
Deinococcus radiodurans R1

Site:
position = -124
score = 51.24
sequence = CGCGTCACCGGGGGT...

Gene: DR0262: Thiamin ABC transporter, substrate-binding component
*
Deinococcus geothermalis DSM 11300

Site:
position = -170
score = 42.22
sequence = CGCGTCACCGGGGGT...

Gene: Dgeo_1933: Thiamin ABC transporter, substrate-binding component
*
Deinococcus deserti VCD115

Site:
position = -144
score = 61.69
sequence = TGCGTCACCGGGGGT...

Gene: Deide_15830: Thiamin ABC transporter, substrate-binding component
*
Thermus thermophilus HB27

Site:
position = -117
score = 66.72
sequence = AGGCCGTCACCGGGG...

Gene: TTC1456: Thiamin ABC transporter, substrate-binding component
*
Thermus aquaticus Y51MC23

Site:
position = -114
score = 71.03
sequence = GGCGTCACCGGGGGT...

Gene: TaqDRAFT_4918: Thiamin ABC transporter, substrate-binding component
Thiamin ABC transporter, substrate-binding component
Deide_15840
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_15840: Putative nuclease
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Putative nuclease
thiP
 
Deinococcus radiodurans R1

Gene: DR2488: Thiamin ABC transporter, permease protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1934: Thiamin ABC transporter, permease protein
 
Deinococcus deserti VCD115

Gene: Deide_15850: Thiamin ABC transporter, permease protein
 
Thermus thermophilus HB27

Gene: TTC1455: Thiamin ABC transporter, permease protein
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_4919: Thiamin ABC transporter, permease protein
Thiamin ABC transporter, permease protein
thiQ2
 
Deinococcus radiodurans R1

Gene: DR0062: Thiamin ABC transporter, ATP-binding protein
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1938: Thiamin ABC transporter, ATP-binding protein
 
Deinococcus deserti VCD115

Gene: Deide_15860: Thiamin ABC transporter, ATP-binding protein
 
Thermus thermophilus HB27

Gene: TTC1059: Thiamin ABC transporter, ATP-binding protein
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_5099: Thiamin ABC transporter, ATP-binding protein
Thiamin ABC transporter, ATP-binding protein
Deide_15870
 
Deinococcus radiodurans R1
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_15870: Conserved hypothetical protein, precursor
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Conserved hypothetical protein, precursor
DR1733
 
Deinococcus radiodurans R1

Gene: DR1733: Conserved hypothetical protein
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_15880: Conserved hypothetical protein
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Conserved hypothetical protein
thiN
 
Deinococcus radiodurans R1

Gene: DR0552: Thiamin pyrophosphokinase (EC 2.7.6.2)
 
Deinococcus geothermalis DSM 11300
 
Deinococcus deserti VCD115

Gene: Deide_15890: Thiamin pyrophosphokinase (EC 2.7.6.2)
 
Thermus thermophilus HB27

Gene: TTC1060: Thiamin pyrophosphokinase (EC 2.7.6.2)
 
Thermus aquaticus Y51MC23
Thiamin pyrophosphokinase (EC 2.7.6.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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