Regulog TPP - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | 6 | 2 |
| Deinococcus geothermalis DSM 11300 | 8 | 2 |
| Deinococcus deserti VCD115 | 13 | 2 |
| Thermus thermophilus HB27 | 9 | 2 |
| Thermus aquaticus Y51MC23 | 8 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| thiE |
Gene: DRA0174: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Dgeo_1923: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Deide_04520: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
*
Thermus thermophilus HB27 Site: position = -179 score = 78.35 sequence = GGGCAGGCTAGGGGT... Gene: TTC0315: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
*
Thermus aquaticus Y51MC23 Site: position = -177 score = 83.56 sequence = CTGCAGGCTAGGGGT... Gene: TaqDRAFT_3299: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiS |
Gene: DRA0173: Sulfur carrier protein ThiS |
Gene: Dgeo_1922: Sulfur carrier protein ThiS |
Gene: Deide_04525: Sulfur carrier protein ThiS |
Gene: TTC0316: Sulfur carrier protein ThiS |
Gene: TaqDRAFT_3300: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: DRA0172: Thiazole biosynthesis protein ThiG |
Gene: Dgeo_1921: Thiazole biosynthesis protein ThiG |
Gene: Deide_04530: Thiazole biosynthesis protein ThiG |
Gene: TTC0317: Thiazole biosynthesis protein ThiG |
Gene: TaqDRAFT_3301: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiO |
|
Gene: Dgeo_1920: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Deide_04540: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: TTC0318: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: TaqDRAFT_3302: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiC |
*
Deinococcus radiodurans R1 Site: position = -325 score = 57.02 sequence = GCATCGTCAACAGGG... Gene: DRA0175: Thiamin biosynthesis protein ThiC |
*
Deinococcus geothermalis DSM 11300 Site: position = -269 score = 60.04 sequence = GGGCAGTCACCAGGG... Gene: Dgeo_1924: Thiamin biosynthesis protein ThiC |
*
Deinococcus deserti VCD115 Site: position = -352 score = 71.1 sequence = AGCGTCACCAGGGGT... Gene: Deide_04510: Thiamin biosynthesis protein ThiC |
Gene: TTC0319: Thiamin biosynthesis protein ThiC |
Gene: TaqDRAFT_3303: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| niaP |
|
|
|
Gene: TTC0320: Thiamin transporter, NiaP family |
|
Thiamin transporter, NiaP family |
| thiD |
Gene: DRA0171: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Dgeo_1919: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Deide_04550: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: TTC0321: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: TaqDRAFT_3304: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| CRON 2. | ||||||
| thiB |
*
Deinococcus radiodurans R1 Site: position = -124 score = 51.24 sequence = CGCGTCACCGGGGGT... Gene: DR0262: Thiamin ABC transporter, substrate-binding component |
*
Deinococcus geothermalis DSM 11300 Site: position = -170 score = 42.22 sequence = CGCGTCACCGGGGGT... Gene: Dgeo_1933: Thiamin ABC transporter, substrate-binding component |
*
Deinococcus deserti VCD115 Site: position = -144 score = 61.69 sequence = TGCGTCACCGGGGGT... Gene: Deide_15830: Thiamin ABC transporter, substrate-binding component |
*
Thermus thermophilus HB27 Site: position = -117 score = 66.72 sequence = AGGCCGTCACCGGGG... Gene: TTC1456: Thiamin ABC transporter, substrate-binding component |
*
Thermus aquaticus Y51MC23 Site: position = -114 score = 71.03 sequence = GGCGTCACCGGGGGT... Gene: TaqDRAFT_4918: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| Deide_15840 |
|
|
Gene: Deide_15840: Putative nuclease |
|
|
Putative nuclease |
| thiP |
Gene: DR2488: Thiamin ABC transporter, permease protein |
Gene: Dgeo_1934: Thiamin ABC transporter, permease protein |
Gene: Deide_15850: Thiamin ABC transporter, permease protein |
Gene: TTC1455: Thiamin ABC transporter, permease protein |
Gene: TaqDRAFT_4919: Thiamin ABC transporter, permease protein |
Thiamin ABC transporter, permease protein |
| thiQ2 |
Gene: DR0062: Thiamin ABC transporter, ATP-binding protein |
Gene: Dgeo_1938: Thiamin ABC transporter, ATP-binding protein |
Gene: Deide_15860: Thiamin ABC transporter, ATP-binding protein |
Gene: TTC1059: Thiamin ABC transporter, ATP-binding protein |
Gene: TaqDRAFT_5099: Thiamin ABC transporter, ATP-binding protein |
Thiamin ABC transporter, ATP-binding protein |
| Deide_15870 |
|
|
Gene: Deide_15870: Conserved hypothetical protein, precursor |
|
|
Conserved hypothetical protein, precursor |
| DR1733 |
Gene: DR1733: Conserved hypothetical protein |
|
Gene: Deide_15880: Conserved hypothetical protein |
|
|
Conserved hypothetical protein |
| thiN |
Gene: DR0552: Thiamin pyrophosphokinase (EC 2.7.6.2) |
|
Gene: Deide_15890: Thiamin pyrophosphokinase (EC 2.7.6.2) |
Gene: TTC1060: Thiamin pyrophosphokinase (EC 2.7.6.2) |
|
Thiamin pyrophosphokinase (EC 2.7.6.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |