Regulog Rex - Thermoanaerobacterales
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Genome | Genes | Operons |
|---|---|---|
| Caldicellulosiruptor saccharolyticus DSM 8903 | 22 | 6 |
| Thermoanaerobacter tengcongensis MB4 | 33 | 13 |
| Thermoanaerobacter ethanolicus X514 | 16 | 11 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| adhA2 |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -46 score = 5.60024 sequence = ATGTTAAAATTATAACAA Gene: Csac_0407: Alcohol dehydrogenase (EC 1.1.1.1), Fe-containing |
|
Gene: Teth514_1935: Alcohol dehydrogenase (EC 1.1.1.1), Fe-containing |
Alcohol dehydrogenase (EC 1.1.1.1), Fe-containing |
| CRON 2. | ||||
| hydC |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -38 score = 5.22386 sequence = ATGTTAAATTTCTAACAA Gene: Csac_1860: NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2) |
*
Thermoanaerobacter tengcongensis MB4 Site: position = -82 score = 4.99253 sequence = ATGATATAATATTAACGA Site: position = -104 score = 5.21615 sequence = TTGTTAAAAAATTAATGA Gene: TTE0890: NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2) |
*
Thermoanaerobacter ethanolicus X514 Site: position = -84 score = 4.64604 sequence = ATGATATAATATTGACGA Site: position = -106 score = 5.56654 sequence = TTGTTAAAAATTTAATAA Gene: Teth514_2142: NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2) |
NAD-reducing Fe-hydrogenase, subunit HydC (EC 1.12.7.2) |
| CLOLEP_03890 |
Gene: Csac_1861: histidine kinase |
Gene: TTE0891: histidine kinase |
Gene: Teth514_2141: histidine kinase |
histidine kinase |
| hydD |
Gene: Csac_1862: NAD-reducing Fe-hydrogenase, ferredoxin subunit HydD (EC 1.12.7.2) |
Gene: TTE0892: NAD-reducing Fe-hydrogenase, ferredoxin subunit HydD (EC 1.12.7.2) |
Gene: Teth514_2140: NAD-reducing Fe-hydrogenase, ferredoxin subunit HydD (EC 1.12.7.2) |
NAD-reducing Fe-hydrogenase, ferredoxin subunit HydD (EC 1.12.7.2) |
| hydB |
Gene: Csac_1863: NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2) |
Gene: TTE0893: NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2) |
Gene: Teth514_2139: NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2) |
NAD-reducing Fe-hydrogenase, subunit HydB (EC 1.12.7.2) |
| hydA |
Gene: Csac_1864: NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2) |
Gene: TTE0894: NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2) |
Gene: Teth514_2138: NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2) |
NAD-reducing Fe-hydrogenase, subunit HydA (EC 1.12.7.2) |
| CRON 3. | ||||
| echA |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -45 score = 5.03993 sequence = TTGTTAACAAATTAACTT Gene: Csac_1534: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit A |
*
Thermoanaerobacter tengcongensis MB4 Site: position = -144 score = 5.86399 sequence = TTGTTAAAATAATAACAA Gene: TTE0123: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit A |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit A |
| echB |
Gene: Csac_1535: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit B |
Gene: TTE0124: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit B |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit B |
| echC |
Gene: Csac_1536: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit C |
Gene: TTE0125: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit C |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit C |
| echD |
Gene: Csac_1537: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit D |
Gene: TTE0126: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit D |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit D |
| echE |
Gene: Csac_1538: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit E |
Gene: TTE0127: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit E |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit E |
| echF |
Gene: Csac_1539: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit F |
Gene: TTE0128: Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit F |
|
Energy-conserving Ni-Fe hydrogenase (ferredoxin), subunit F |
| hypA |
Gene: Csac_1540: [NiFe] hydrogenase nickel incorporation protein HypA |
Gene: TTE0129: [NiFe] hydrogenase nickel incorporation protein HypA |
|
[NiFe] hydrogenase nickel incorporation protein HypA |
| hypB |
Gene: Csac_1541: [NiFe] hydrogenase nickel incorporation-associated protein HypB |
Gene: TTE0130: [NiFe] hydrogenase nickel incorporation-associated protein HypB |
|
[NiFe] hydrogenase nickel incorporation-associated protein HypB |
| hypF |
Gene: Csac_1542: [NiFe] hydrogenase metallocenter assembly protein HypF |
Gene: TTE0131: [NiFe] hydrogenase metallocenter assembly protein HypF |
|
[NiFe] hydrogenase metallocenter assembly protein HypF |
| hypC |
Gene: Csac_1543: [NiFe] hydrogenase metallocenter assembly protein HypC |
Gene: TTE0132: [NiFe] hydrogenase metallocenter assembly protein HypC |
|
[NiFe] hydrogenase metallocenter assembly protein HypC |
| hypD |
Gene: Csac_1544: [NiFe] hydrogenase metallocenter assembly protein HypD |
Gene: TTE0133: [NiFe] hydrogenase metallocenter assembly protein HypD |
|
[NiFe] hydrogenase metallocenter assembly protein HypD |
| hypE |
Gene: Csac_1545: [NiFe] hydrogenase metallocenter assembly protein HypE |
Gene: TTE0134: [NiFe] hydrogenase metallocenter assembly protein HypE |
|
[NiFe] hydrogenase metallocenter assembly protein HypE |
| CRON 4. | ||||
| Csac_2425 |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -187 score = 5.52146 sequence = ATGTTATAATATTAACAA Gene: Csac_2425: hypothetical protein |
|
|
hypothetical protein |
| hydG |
Gene: Csac_2424: [Fe] hydrogenase maturation protein HydG |
*
Thermoanaerobacter tengcongensis MB4 Site: position = -93 score = 5.46442 sequence = TTGTTGAAAATTTAACAA Gene: TTE1568: [Fe] hydrogenase maturation protein HydG |
*
Thermoanaerobacter ethanolicus X514 Site: position = -87 score = 5.52708 sequence = TTGTTGAAAAATTAACAA Gene: Teth514_0530: [Fe] hydrogenase maturation protein HydG |
[Fe] hydrogenase maturation protein HydG |
| CRON 5. | ||||
| rex |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -39 score = 5.2201 sequence = ATGTCAAAAAAATATCAA Gene: Csac_1220: Redox-sensitive transcriptional regulator Rex |
*
Thermoanaerobacter tengcongensis MB4 Site: position = -60 score = 4.70833 sequence = TTGACAAGAAATTTACAA Gene: TTE0543: Redox-sensitive transcriptional regulator Rex |
*
Thermoanaerobacter ethanolicus X514 Site: position = -59 score = 5.30617 sequence = TTGACAAAAAATTTACAA Gene: Teth514_0496: Redox-sensitive transcriptional regulator Rex |
Redox-sensitive transcriptional regulator Rex |
| CRON 6. | ||||
| adhA |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -213 score = 5.19135 sequence = TTGATATAAATTTTACAA Site: position = -246 score = 5.22751 sequence = TTGATTATTTTTTAACAA Gene: TTE0696: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
*2
Thermoanaerobacter ethanolicus X514 Site: position = -31 score = 5.19135 sequence = TTGATATAAATTTTACAA Site: position = -64 score = 5.22751 sequence = TTGATTATTTTTTAACAA Gene: Teth514_0654: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent Site: position = -33 score = 5.72028 sequence = TTGTTATAAATTTAACAA Gene: Teth514_0564: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
| CRON 7. | ||||
| adhB |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -96 score = 5.15955 sequence = TTGACAAATTTTTAACTA Site: position = -63 score = 5.08198 sequence = TTGCAAAAAATTTAACAA Gene: TTE0695: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent |
*
Thermoanaerobacter ethanolicus X514 Site: position = -113 score = 5.38329 sequence = TTGATAAATTTTTAACTA Site: position = -80 score = 5.55872 sequence = TTGTAAAAAATTTAACAA Gene: Teth514_0653: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent |
Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent |
| CRON 8. | ||||
| fnorB |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -116 score = 5.51272 sequence = TTGGTAAAAAAATAACAA Gene: TTE0694: ferredoxin-NADP(+) reductase subunit beta |
*
Thermoanaerobacter ethanolicus X514 Site: position = -113 score = 5.28898 sequence = TTGGCAAAAAAATAACAA Gene: Teth514_0652: ferredoxin-NADP(+) reductase subunit beta |
ferredoxin-NADP(+) reductase subunit beta |
| fnorA |
|
Gene: TTE0693: ferredoxin-NADP(+) reductase subunit alpha |
Gene: Teth514_0651: ferredoxin-NADP(+) reductase subunit alpha |
ferredoxin-NADP(+) reductase subunit alpha |
| CRON 9. | ||||
| TTE0622 |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -73 score = 5.1963 sequence = TTGATAAATATTTGACAT Gene: TTE0622: membrane spanning protein |
*
Thermoanaerobacter ethanolicus X514 Site: position = -74 score = 4.77146 sequence = TTGATATTTATTTGACAT Gene: Teth514_0252: membrane spanning protein |
membrane spanning protein |
| CRON 10. | ||||
| COG4739 |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -94 score = 5.54049 sequence = TTGATAAAATTTTATCAA Gene: TTE2157: Ferredoxin domain containing protein |
*
Thermoanaerobacter ethanolicus X514 Site: position = -98 score = 5.54049 sequence = TTGATAAAATTTTATCAA Gene: Teth514_0970: Ferredoxin domain containing protein |
Ferredoxin domain containing protein |
| CRON 11. | ||||
| noxE |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -107 score = 4.77374 sequence = TTGATATTTTATTGACAT Site: position = -158 score = 4.51657 sequence = TTGTCAACAAAAAATCAA Gene: TTE1884: NADH oxidase (EC 1.6.99.3) |
*
Thermoanaerobacter ethanolicus X514 Site: position = -162 score = 5.01643 sequence = TTGTTAATAAAAAATCAA Site: position = -112 score = 4.77374 sequence = TTGATATTTTATTGACAT Gene: Teth514_1131: NADH oxidase (EC 1.6.99.3) |
NADH oxidase (EC 1.6.99.3) |
| CRON 12. | ||||
| PF00724 |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -35 score = 5.48061 sequence = CTGTTAATAAATTAACAA Gene: TTE2131: NADH:flavin oxidoreductase |
|
NADH:flavin oxidoreductase |
| CRON 13. | ||||
| bcd |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -33 score = 5.44384 sequence = ATGTTAAAAAAATATCAA Gene: TTE0545: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
|
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| etfB |
|
Gene: TTE0546: Electron transfer flavoprotein, beta subunit |
|
Electron transfer flavoprotein, beta subunit |
| etfA |
|
Gene: TTE0547: Electron transfer flavoprotein, alpha subunit |
|
Electron transfer flavoprotein, alpha subunit |
| hbd |
|
Gene: TTE0548: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
|
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
| acoA |
|
Gene: TTE0549: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| CRON 14. | ||||
| adhE |
|
|
*
Thermoanaerobacter ethanolicus X514 Site: position = -151 score = 5.37205 sequence = TTGTTAAATGAATAACAA Site: position = -32 score = 5.39797 sequence = TTGTTAAATTATTAACAC Gene: Teth514_0627: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
| CRON 15. | ||||
| ndh |
|
*
Thermoanaerobacter tengcongensis MB4 Site: position = -58 score = 4.9885 sequence = ATGATAAAATATTGACTA Site: position = -34 score = 5.246 sequence = TTGTTATAATTATATCAA Gene: TTE2486: NADH dehydrogenase (EC 1.6.99.3) |
|
NADH dehydrogenase (EC 1.6.99.3) |
| CRON 16. | ||||
| adhA3 |
*
Caldicellulosiruptor saccharolyticus DSM 8903 Site: position = -30 score = 5.05037 sequence = ATGTTAATTTTTTAACAG Site: position = -53 score = 4.73097 sequence = ATGTTTATATAATAATAA Site: position = -70 score = 4.81894 sequence = TTGACAAAAAACAAACAA Gene: Csac_0622: Alcohol dehydrogenase (EC 1.1.1.1), iron-containing |
|
|
Alcohol dehydrogenase (EC 1.1.1.1), iron-containing |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |