Regulog Glycine - Rhizobiales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhizobiales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | 3 | 1 |
| Rhizobium sp. NGR234 | 3 | 1 |
| Rhizobium leguminosarum bv. viciae 3841 | 1 | 1 |
| Rhizobium etli CFN 42 | 3 | 1 |
| Agrobacterium tumefaciens str. C58 (Cereon) | 3 | 1 |
| Mesorhizobium sp. BNC1 | 5 | 2 |
| Mesorhizobium loti MAFF303099 | 4 | 2 |
| Brucella melitensis 16M | 3 | 1 |
| Bartonella quintana str. Toulouse | 3 | 1 |
| Rhodopseudomonas palustris CGA009 | 3 | 1 |
| Bradyrhizobium japonicum USDA 110 | 3 | 1 |
| Bradyrhizobium sp. BTAi1 | 3 | 1 |
| Nitrobacter winogradskyi Nb-255 | 3 | 1 |
| Azorhizobium caulinodans ORS 571 | 12 | 2 |
| Xanthobacter autotrophicus Py2 | 5 | 1 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| dppA |
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Azorhizobium caulinodans ORS 571 Site: position = -18 score = 50.36 sequence = CCAGAAGACGTCCGG... Site: position = -104 score = 60.36 sequence = AATGGCAGCACCGGG... Gene: AZC_2080: putative ABC transporter (substrate-binding protein) |
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putative ABC transporter (substrate-binding protein) |
| dppB |
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Gene: RPA1216: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) |
Gene: blr5598: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) |
Gene: BBta_5256: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) |
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Gene: AZC_2079: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) |
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Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) |
| dppC |
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Gene: RPA1215: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
Gene: blr5599: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
Gene: BBta_5257: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
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Gene: AZC_2078: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
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Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
| dppD |
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Gene: RPA1214: Dipeptide transport system ATP-binding protein DppD |
Gene: blr5600: Dipeptide transport system ATP-binding protein DppD |
Gene: BBta_5258: Dipeptide transport system ATP-binding protein DppD |
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Gene: AZC_2077: Dipeptide transport system ATP-binding protein DppD |
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Dipeptide transport system ATP-binding protein DppD |
| RPA1213 |
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Gene: RPA1213: MlrC-like protein |
Gene: blr5601: MlrC-like protein |
Gene: BBta_5259: MlrC-like protein |
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Gene: AZC_2076: MlrC-like protein |
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MlrC-like protein |
| abgB |
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Gene: RPA3439: Hippurate hydrolase (EC 3.5.1.32) |
Gene: blr5602: Hippurate hydrolase (EC 3.5.1.32) |
Gene: BBta_5260: Hippurate hydrolase (EC 3.5.1.32) |
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Gene: AZC_2075: Hippurate hydrolase (EC 3.5.1.32) |
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Hippurate hydrolase (EC 3.5.1.32) |
| argE |
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Gene: RPA1217: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11) |
Gene: blr5597: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11) |
Gene: BBta_5255: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11) |
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Gene: AZC_2074: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11) |
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blr5597; putative carboxypeptidase precursor (EC 3.4.17.11) |
| CRON 2. | ||||||||||||||||
| dadA |
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Mesorhizobium loti MAFF303099 Site: position = -217 score = 45.75 sequence = GGGAGAGATCGGCTA... Site: position = -143 score = 49.72 sequence = CCGAACGATCTGGAG... Gene: mlr9201: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
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D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
| CRON 3. | ||||||||||||||||
| Meso_4248 |
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Mesorhizobium sp. BNC1 Site: position = -242 score = 54.8 sequence = AACTGGTTGCGGGAG... Site: position = -158 score = 45.53 sequence = GGCGACACTCTGGAA... Gene: Meso_4248: hypothetical protein |
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hypothetical protein |
| serCA |
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Gene: NGR_c26270: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: pRL90176: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
Gene: RHE_CH01024: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Gene: Meso_4249: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
| CRON 4. | ||||||||||||||||
| gcvT |
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Sinorhizobium meliloti 1021 Site: position = -144 score = 45.68 sequence = CCGGTAGGACTCTGG... Site: position = -231 score = 54.16 sequence = TTCGACCTCGTTGGG... Gene: SMc02047: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Rhizobium sp. NGR234 Site: position = 142 score = 46.86 sequence = CCGGTAGGACTCTGG... Site: position = 55 score = 59.85 sequence = GACGATCTTGTTGGG... Gene: NGR_c15490: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -248 score = 56.63 sequence = CAACCTTGTTGGGAG... Site: position = -156 score = 52.02 sequence = GACGGAACTCTGGAG... Gene: RL2572: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Rhizobium etli CFN 42 Site: position = -249 score = 53.65 sequence = CAACCCTGTTGGGAG... Site: position = -157 score = 47.39 sequence = GACGGAACTCTGGAG... Gene: RHE_CH02241: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -155 score = 41.32 sequence = ACGACGGAACTCTGG... Site: position = -240 score = 58.85 sequence = CGCATCATCGTTGGG... Gene: Atu1464: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Mesorhizobium sp. BNC1 Site: position = -149 score = 48.71 sequence = GGTTAGACACTCTGG... Site: position = -232 score = 53.05 sequence = CTGCCCGTCCGTGGG... Gene: Meso_1018: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Mesorhizobium loti MAFF303099 Site: position = -235 score = 61.31 sequence = ACCTGTTTGCGGGAG... Site: position = -151 score = 48.86 sequence = AAAGACACTCTGGAA... Gene: mlr0883: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Brucella melitensis 16M Site: position = -231 score = 48.57 sequence = GTCTGTTTGCGGGAG... Site: position = -148 score = 49.65 sequence = AAGACAACTCTGGAA... Gene: BMEII0559: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Bartonella quintana str. Toulouse Site: position = -137 score = 26.74 sequence = AAGGCAGATCTGGAA... Site: position = -243 score = 15.79 sequence = ATCGGAATATATTGG... Gene: BQ10130: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Rhodopseudomonas palustris CGA009 Site: position = -223 score = 49.76 sequence = TAAGTCGCGTCGGGA... Site: position = -136 score = 35.1 sequence = GACTGACATCTGGAA... Gene: RPA3848: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Bradyrhizobium japonicum USDA 110 Site: position = -233 score = 55.53 sequence = ACGGCCACGTCGGGA... Site: position = -143 score = 38.26 sequence = TGACAGCATCTGGAA... Gene: blr5751: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Bradyrhizobium sp. BTAi1 Site: position = -257 score = 48.19 sequence = CAGTCGCGTCGGGAG... Site: position = -147 score = 35.64 sequence = CTACTGCATCTGGAA... Gene: BBta_5449: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Nitrobacter winogradskyi Nb-255 Site: position = -144 score = 38.76 sequence = ACTGGTTACATCTGG... Site: position = -246 score = 48.3 sequence = GTTTAGTCGCGCCGG... Gene: Nwi_1286: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Azorhizobium caulinodans ORS 571 Site: position = -318 score = 50.66 sequence = TGATCCCTGCGGGAG... Site: position = -213 score = 32.04 sequence = CTCTGGAAAGCAGTC... Gene: AZC_4245: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Xanthobacter autotrophicus Py2 Site: position = -314 score = 48.17 sequence = GACGATCCCTGCGGG... Site: position = -216 score = 38.26 sequence = AATCTCTGGAAAGCA... Gene: Xaut_2201: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: SMc02048: Glycine cleavage system H protein |
Gene: NGR_c15480: Glycine cleavage system H protein |
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Gene: RHE_CH02242: Glycine cleavage system H protein |
Gene: Atu1463: Glycine cleavage system H protein |
Gene: Meso_1017: Glycine cleavage system H protein |
Gene: mlr0884: Glycine cleavage system H protein |
Gene: BMEII0560: Glycine cleavage system H protein |
Gene: BQ10120: Glycine cleavage system H protein |
Gene: RPA3849: Glycine cleavage system H protein |
Gene: blr5752: Glycine cleavage system H protein |
Gene: BBta_5450: Glycine cleavage system H protein |
Gene: Nwi_1285: Glycine cleavage system H protein |
Gene: AZC_4246: Glycine cleavage system H protein |
Gene: Xaut_2200: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| NGR_b19840 |
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Gene: AZC_4247: OsmC/Ohr family protein |
Gene: Xaut_2199: OsmC/Ohr family protein |
OsmC/Ohr family protein |
| gcvP |
Gene: SMc02049: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: NGR_c15470: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: RL2573: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: RHE_CH02243: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Atu1462: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Meso_1016: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: mlr0885: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BMEII0561: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BQ10110: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: RPA3850: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: blr5753: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BBta_5451: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Nwi_1284: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: AZC_4248: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Xaut_2198: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
| gcvP2 |
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Gene: AZC_4249: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Xaut_2197: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |