Statistics of regulated genes

Genome	Genes	Operons
Sinorhizobium meliloti 1021	3	1
Rhizobium sp. NGR234	3	1
Rhizobium leguminosarum bv. viciae 3841	1	1
Rhizobium etli CFN 42	3	1
Agrobacterium tumefaciens str. C58 (Cereon)	3	1
Mesorhizobium sp. BNC1	5	2
Mesorhizobium loti MAFF303099	4	2
Brucella melitensis 16M	3	1
Bartonella quintana str. Toulouse	3	1
Rhodopseudomonas palustris CGA009	3	1
Bradyrhizobium japonicum USDA 110	3	1
Bradyrhizobium sp. BTAi1	3	1
Nitrobacter winogradskyi Nb-255	3	1
Azorhizobium caulinodans ORS 571	12	2
Xanthobacter autotrophicus Py2	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
dppA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	* Azorhizobium caulinodans ORS 571 Site: position = -18 score = 50.36 sequence = CCAGAAGACGTCCGG... Site: position = -104 score = 60.36 sequence = AATGGCAGCACCGGG... Gene: AZC_2080: putative ABC transporter (substrate-binding protein)	Xanthobacter autotrophicus Py2	putative ABC transporter (substrate-binding protein)
dppB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1216: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	Bradyrhizobium japonicum USDA 110 Gene: blr5598: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	Bradyrhizobium sp. BTAi1 Gene: BBta_5256: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2079: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	Xanthobacter autotrophicus Py2	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
dppC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1215: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	Bradyrhizobium japonicum USDA 110 Gene: blr5599: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	Bradyrhizobium sp. BTAi1 Gene: BBta_5257: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2078: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	Xanthobacter autotrophicus Py2	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
dppD	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1214: Dipeptide transport system ATP-binding protein DppD	Bradyrhizobium japonicum USDA 110 Gene: blr5600: Dipeptide transport system ATP-binding protein DppD	Bradyrhizobium sp. BTAi1 Gene: BBta_5258: Dipeptide transport system ATP-binding protein DppD	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2077: Dipeptide transport system ATP-binding protein DppD	Xanthobacter autotrophicus Py2	Dipeptide transport system ATP-binding protein DppD
RPA1213	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1213: MlrC-like protein	Bradyrhizobium japonicum USDA 110 Gene: blr5601: MlrC-like protein	Bradyrhizobium sp. BTAi1 Gene: BBta_5259: MlrC-like protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2076: MlrC-like protein	Xanthobacter autotrophicus Py2	MlrC-like protein
abgB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3439: Hippurate hydrolase (EC 3.5.1.32)	Bradyrhizobium japonicum USDA 110 Gene: blr5602: Hippurate hydrolase (EC 3.5.1.32)	Bradyrhizobium sp. BTAi1 Gene: BBta_5260: Hippurate hydrolase (EC 3.5.1.32)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2075: Hippurate hydrolase (EC 3.5.1.32)	Xanthobacter autotrophicus Py2	Hippurate hydrolase (EC 3.5.1.32)
argE	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA1217: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11)	Bradyrhizobium japonicum USDA 110 Gene: blr5597: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11)	Bradyrhizobium sp. BTAi1 Gene: BBta_5255: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2074: blr5597; putative carboxypeptidase precursor (EC 3.4.17.11)	Xanthobacter autotrophicus Py2	blr5597; putative carboxypeptidase precursor (EC 3.4.17.11)
CRON 2.
dadA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -217 score = 45.75 sequence = GGGAGAGATCGGCTA... Site: position = -143 score = 49.72 sequence = CCGAACGATCTGGAG... Gene: mlr9201: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
CRON 3.
Meso_4248	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -242 score = 54.8 sequence = AACTGGTTGCGGGAG... Site: position = -158 score = 45.53 sequence = GGCGACACTCTGGAA... Gene: Meso_4248: hypothetical protein	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	hypothetical protein
serCA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234 Gene: NGR_c26270: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90176: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Rhizobium etli CFN 42 Gene: RHE_CH01024: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_4249: Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Phosphoserine aminotransferase (EC 2.6.1.52) / D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
CRON 4.
gcvT	* Sinorhizobium meliloti 1021 Site: position = -144 score = 45.68 sequence = CCGGTAGGACTCTGG... Site: position = -231 score = 54.16 sequence = TTCGACCTCGTTGGG... Gene: SMc02047: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Rhizobium sp. NGR234 Site: position = 142 score = 46.86 sequence = CCGGTAGGACTCTGG... Site: position = 55 score = 59.85 sequence = GACGATCTTGTTGGG... Gene: NGR_c15490: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -248 score = 56.63 sequence = CAACCTTGTTGGGAG... Site: position = -156 score = 52.02 sequence = GACGGAACTCTGGAG... Gene: RL2572: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Rhizobium etli CFN 42 Site: position = -249 score = 53.65 sequence = CAACCCTGTTGGGAG... Site: position = -157 score = 47.39 sequence = GACGGAACTCTGGAG... Gene: RHE_CH02241: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -155 score = 41.32 sequence = ACGACGGAACTCTGG... Site: position = -240 score = 58.85 sequence = CGCATCATCGTTGGG... Gene: Atu1464: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Mesorhizobium sp. BNC1 Site: position = -149 score = 48.71 sequence = GGTTAGACACTCTGG... Site: position = -232 score = 53.05 sequence = CTGCCCGTCCGTGGG... Gene: Meso_1018: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Mesorhizobium loti MAFF303099 Site: position = -235 score = 61.31 sequence = ACCTGTTTGCGGGAG... Site: position = -151 score = 48.86 sequence = AAAGACACTCTGGAA... Gene: mlr0883: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Brucella melitensis 16M Site: position = -231 score = 48.57 sequence = GTCTGTTTGCGGGAG... Site: position = -148 score = 49.65 sequence = AAGACAACTCTGGAA... Gene: BMEII0559: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bartonella quintana str. Toulouse Site: position = -137 score = 26.74 sequence = AAGGCAGATCTGGAA... Site: position = -243 score = 15.79 sequence = ATCGGAATATATTGG... Gene: BQ10130: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Rhodopseudomonas palustris CGA009 Site: position = -223 score = 49.76 sequence = TAAGTCGCGTCGGGA... Site: position = -136 score = 35.1 sequence = GACTGACATCTGGAA... Gene: RPA3848: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bradyrhizobium japonicum USDA 110 Site: position = -233 score = 55.53 sequence = ACGGCCACGTCGGGA... Site: position = -143 score = 38.26 sequence = TGACAGCATCTGGAA... Gene: blr5751: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bradyrhizobium sp. BTAi1 Site: position = -257 score = 48.19 sequence = CAGTCGCGTCGGGAG... Site: position = -147 score = 35.64 sequence = CTACTGCATCTGGAA... Gene: BBta_5449: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Nitrobacter winogradskyi Nb-255 Site: position = -144 score = 38.76 sequence = ACTGGTTACATCTGG... Site: position = -246 score = 48.3 sequence = GTTTAGTCGCGCCGG... Gene: Nwi_1286: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Azorhizobium caulinodans ORS 571 Site: position = -318 score = 50.66 sequence = TGATCCCTGCGGGAG... Site: position = -213 score = 32.04 sequence = CTCTGGAAAGCAGTC... Gene: AZC_4245: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Xanthobacter autotrophicus Py2 Site: position = -314 score = 48.17 sequence = GACGATCCCTGCGGG... Site: position = -216 score = 38.26 sequence = AATCTCTGGAAAGCA... Gene: Xaut_2201: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH	Sinorhizobium meliloti 1021 Gene: SMc02048: Glycine cleavage system H protein	Rhizobium sp. NGR234 Gene: NGR_c15480: Glycine cleavage system H protein	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42 Gene: RHE_CH02242: Glycine cleavage system H protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1463: Glycine cleavage system H protein	Mesorhizobium sp. BNC1 Gene: Meso_1017: Glycine cleavage system H protein	Mesorhizobium loti MAFF303099 Gene: mlr0884: Glycine cleavage system H protein	Brucella melitensis 16M Gene: BMEII0560: Glycine cleavage system H protein	Bartonella quintana str. Toulouse Gene: BQ10120: Glycine cleavage system H protein	Rhodopseudomonas palustris CGA009 Gene: RPA3849: Glycine cleavage system H protein	Bradyrhizobium japonicum USDA 110 Gene: blr5752: Glycine cleavage system H protein	Bradyrhizobium sp. BTAi1 Gene: BBta_5450: Glycine cleavage system H protein	Nitrobacter winogradskyi Nb-255 Gene: Nwi_1285: Glycine cleavage system H protein	Azorhizobium caulinodans ORS 571 Gene: AZC_4246: Glycine cleavage system H protein	Xanthobacter autotrophicus Py2 Gene: Xaut_2200: Glycine cleavage system H protein	Glycine cleavage system H protein
NGR_b19840	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4247: OsmC/Ohr family protein	Xanthobacter autotrophicus Py2 Gene: Xaut_2199: OsmC/Ohr family protein	OsmC/Ohr family protein
gcvP	Sinorhizobium meliloti 1021 Gene: SMc02049: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Rhizobium sp. NGR234 Gene: NGR_c15470: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2573: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Rhizobium etli CFN 42 Gene: RHE_CH02243: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1462: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Mesorhizobium sp. BNC1 Gene: Meso_1016: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Mesorhizobium loti MAFF303099 Gene: mlr0885: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Brucella melitensis 16M Gene: BMEII0561: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bartonella quintana str. Toulouse Gene: BQ10110: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Rhodopseudomonas palustris CGA009 Gene: RPA3850: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bradyrhizobium japonicum USDA 110 Gene: blr5753: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bradyrhizobium sp. BTAi1 Gene: BBta_5451: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Nitrobacter winogradskyi Nb-255 Gene: Nwi_1284: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Azorhizobium caulinodans ORS 571 Gene: AZC_4248: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Xanthobacter autotrophicus Py2 Gene: Xaut_2198: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) / Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)
gcvP2	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4249: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Xanthobacter autotrophicus Py2 Gene: Xaut_2197: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

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