Regulog YvbF/YvaV - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	MarR
Regulation mode:	repressor
Biological process:	Osmotic stress response
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - MarR
By pathway - Osmotic stress response

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42	10	4
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13	5	2
Bacillus pumilus SAFR-032	5	2
Bacillus subtilis subsp. subtilis str. 168	10	4
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
opuCA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -111 score = 7.83843 sequence = TAAACTTTTTAATTTACAAAGTTTA Gene: RBAM_031050: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3029: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -79 score = 7.49372 sequence = TAAACTTTTTATTTTACAAAGTGTA Gene: BLi03651: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	* Bacillus pumilus SAFR-032 Site: position = -89 score = 7.35048 sequence = TAAACTTTTTATTTTATAAAGTTTG Gene: BPUM_3043: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -85 score = 7.49372 sequence = TAAACTTTTTATTTTACAAAGTTCA Gene: BSU33830: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_1633: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA	Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
opuCB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031040: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3030: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03650: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Bacillus pumilus SAFR-032 Gene: BPUM_3042: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33820: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_1634: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB	Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
opuCC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031030: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3031: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03649: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Bacillus pumilus SAFR-032 Gene: BPUM_3041: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33810: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_1635: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein	Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
opuCD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031020: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC3032: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi03648: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Bacillus pumilus SAFR-032 Gene: BPUM_3040: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33800: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_1636: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD	Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD

CRON 2.
yvaV	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -199 score = 7.83843 sequence = TAAACTTTGTAAATTAAAAAGTTTA Gene: RBAM_031060: Transcriptional regulator of choline transport, MarR family	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC1772: Transcriptional regulator of choline transport, MarR family	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -203 score = 7.49372 sequence = TACACTTTGTAAAATAAAAAGTTTA Gene: BLi03652: Transcriptional regulator of choline transport, MarR family	* Bacillus pumilus SAFR-032 Site: position = -205 score = 7.35048 sequence = CAAACTTTATAAAATAAAAAGTTTA Gene: BPUM_3044: Transcriptional regulator of choline transport, MarR family	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -198 score = 7.13209 sequence = TAAAGTTTATAAAATAAAAAGTTTA Gene: BSU33740: Transcriptional regulator of choline transport, MarR family	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of choline transport, MarR family

CRON 3.
yvbF	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -201 score = 7.00573 sequence = TGAAATTTGTAAAATAAAAAGTTTA Gene: RBAM_031110: Transcriptional regulator of choline transport, MarR family	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -203 score = 7.49372 sequence = TGAACTTTGTAAAATAAAAAGTTTA Gene: BSU33840: Transcriptional regulator of choline transport, MarR family	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of choline transport, MarR family

CRON 4.
opuBA	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -111 score = 7.83843 sequence = TAAACTTTTTAATTTACAAAGTTTA Gene: RBAM_031050: Osmotically activated choline ABC transporter, ATP-binding protein OpuBA	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -110 score = 7.13209 sequence = TAAACTTTTTATTTTATAAACTTTA Gene: BSU33730: Osmotically activated choline ABC transporter, ATP-binding protein OpuBA	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Osmotically activated choline ABC transporter, ATP-binding protein OpuBA
opuBB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031040: Osmotically activated choline ABC transporter, permease protein OpuBB	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33720: Osmotically activated choline ABC transporter, permease protein OpuBB	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Osmotically activated choline ABC transporter, permease protein OpuBB
opuBC	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031030: Osmotically activated choline ABC transporter, substrate-binding protein OpuBC	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33710: Osmotically activated choline ABC transporter, substrate-binding protein OpuBC	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Osmotically activated choline ABC transporter, substrate-binding protein OpuBC
opuBD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_031020: Osmotically activated choline ABC transporter, permease protein OpuBB	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33700: Osmotically activated choline ABC transporter, permease protein OpuBB	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Osmotically activated choline ABC transporter, permease protein OpuBB

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YvbF/YvaV - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --