Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YvbF/YvaV - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: MarR
Regulation mode: repressor
Biological process: Osmotic stress response
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 10 4
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 5 2
Bacillus pumilus SAFR-032 5 2
Bacillus subtilis subsp. subtilis str. 168 10 4
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
opuCA
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -111
score = 7.83843
sequence = TAAACTTTTTAATTTACAAAGTTTA

Gene: RBAM_031050: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC3029: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -79
score = 7.49372
sequence = TAAACTTTTTATTTTACAAAGTGTA

Gene: BLi03651: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
*
Bacillus pumilus SAFR-032

Site:
position = -89
score = 7.35048
sequence = TAAACTTTTTATTTTATAAAGTTTG

Gene: BPUM_3043: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -85
score = 7.49372
sequence = TAAACTTTTTATTTTACAAAGTTCA

Gene: BSU33830: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1633: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, ATP-binding protein OpuCA
opuCB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031040: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC3030: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03650: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
 
Bacillus pumilus SAFR-032

Gene: BPUM_3042: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33820: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1634: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCB
opuCC
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031030: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC3031: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03649: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_3041: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33810: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1635: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, substrate-binding protein
opuCD
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031020: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC3032: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03648: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
Bacillus pumilus SAFR-032

Gene: BPUM_3040: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33800: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1636: Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
Osmotically activated L-carnitine/crotonobetaine/gamma-butyrobetaine/choline-O-sulphate/ectoine/choline ABC transporter, permease protein OpuCD
 
CRON 2.
yvaV
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -199
score = 7.83843
sequence = TAAACTTTGTAAATTAAAAAGTTTA

Gene: RBAM_031060: Transcriptional regulator of choline transport, MarR family
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC1772: Transcriptional regulator of choline transport, MarR family
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -203
score = 7.49372
sequence = TACACTTTGTAAAATAAAAAGTTTA

Gene: BLi03652: Transcriptional regulator of choline transport, MarR family
*
Bacillus pumilus SAFR-032

Site:
position = -205
score = 7.35048
sequence = CAAACTTTATAAAATAAAAAGTTTA

Gene: BPUM_3044: Transcriptional regulator of choline transport, MarR family
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -198
score = 7.13209
sequence = TAAAGTTTATAAAATAAAAAGTTTA

Gene: BSU33740: Transcriptional regulator of choline transport, MarR family
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of choline transport, MarR family
 
CRON 3.
yvbF
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -201
score = 7.00573
sequence = TGAAATTTGTAAAATAAAAAGTTTA

Gene: RBAM_031110: Transcriptional regulator of choline transport, MarR family
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -203
score = 7.49372
sequence = TGAACTTTGTAAAATAAAAAGTTTA

Gene: BSU33840: Transcriptional regulator of choline transport, MarR family
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of choline transport, MarR family
 
CRON 4.
opuBA
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -111
score = 7.83843
sequence = TAAACTTTTTAATTTACAAAGTTTA

Gene: RBAM_031050: Osmotically activated choline ABC transporter, ATP-binding protein OpuBA
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -110
score = 7.13209
sequence = TAAACTTTTTATTTTATAAACTTTA

Gene: BSU33730: Osmotically activated choline ABC transporter, ATP-binding protein OpuBA
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Osmotically activated choline ABC transporter, ATP-binding protein OpuBA
opuBB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031040: Osmotically activated choline ABC transporter, permease protein OpuBB
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33720: Osmotically activated choline ABC transporter, permease protein OpuBB
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Osmotically activated choline ABC transporter, permease protein OpuBB
opuBC
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031030: Osmotically activated choline ABC transporter, substrate-binding protein OpuBC
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33710: Osmotically activated choline ABC transporter, substrate-binding protein OpuBC
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Osmotically activated choline ABC transporter, substrate-binding protein OpuBC
opuBD
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_031020: Osmotically activated choline ABC transporter, permease protein OpuBB
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13
 
Bacillus pumilus SAFR-032
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU33700: Osmotically activated choline ABC transporter, permease protein OpuBB
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Osmotically activated choline ABC transporter, permease protein OpuBB
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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