Regulog PhnR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:	2-aminoethylphosphonate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - PhnR
By TF family - GntR/Others
By effector - 2-aminoethylphosphonate
By pathway - Phosphonate utilization
By pathway - 2-aminoethylphosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655
Salmonella typhimurium LT2	7	3
Citrobacter koseri ATCC BAA-895
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	7	3
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
phnR	Escherichia coli str. K-12 substr. MG1655	* Salmonella typhimurium LT2 Site: position = -131 score = 5.29201 sequence = CCTTTGGTCTATACCAGATT Gene: STM0430: 2-aminoethylphosphonate utilization regulator, GntR family	Citrobacter koseri ATCC BAA-895	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -153 score = 5.8309 sequence = CATTTGGTCTATACCAGATT Gene: KPN_04062: 2-aminoethylphosphonate utilization regulator, GntR family	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate utilization regulator, GntR family

CRON 2.
phnS	Escherichia coli str. K-12 substr. MG1655	* Salmonella typhimurium LT2 Site: position = -48 score = 6.02449 sequence = AACCTGGTATAGGCCAGAAA Gene: STM0429: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Citrobacter koseri ATCC BAA-895	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -45 score = 6.21525 sequence = AATCTGGTCTACACCAGAAT Gene: KPN_04061: 2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate ABC transporter, periplasmic binding component (TC 3.A.1.9.1)
phnT	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0428: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04060: 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate ABC transporter, ATP-binding protein (TC 3.A.1.9.1)
phnU	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0427: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04059: 2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate ABC transporter, permease protein I (TC 3.A.1.9.1)
phnV	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0426: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04058: 2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate ABC transporter, permease protein II (TC 3.A.1.9.1)

CRON 3.
phnW	Escherichia coli str. K-12 substr. MG1655	* Salmonella typhimurium LT2 Site: position = -28 score = 6.24367 sequence = AATCTGGTATAGACCAAAGG Gene: STM0431: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Citrobacter koseri ATCC BAA-895	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -29 score = 6.52049 sequence = AATCTGGTATAGACCAAATG Gene: KPN_04063: 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37)
phnX	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2 Gene: STM0432: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04064: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320 Gene: PMI3079: Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)	Photorhabdus luminescens subsp. laumondii TTO1	Phosphonoacetaldehyde hydrolase (EC 3.11.1.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --