Regulog VanR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 6 | 2 |
| Delftia acidovorans SPH-1 | 2 | 1 |
| Polaromonas naphthalenivorans CJ2 | 8 | 1 |
| Polaromonas sp. JS666 | 8 | 1 |
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 2 | 1 |
| Verminephrobacter eiseniae EF01-2 | 1 | 1 |
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| vanR |
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Comamonas testosteroni KF-1 Site: position = -46 score = 4.89898 sequence = TGTATACA Site: position = -111 score = 4.89898 sequence = TGTATACA Gene: CtesDRAFT_3110: Transcriptional regulator for vanillate metabolism, GntR family |
*
Delftia acidovorans SPH-1 Site: position = -101 score = 4.89898 sequence = TGTATACA Site: position = -37 score = 4.89898 sequence = TGTATACA Site: position = -142 score = 4.89898 sequence = TGTATACA Gene: Daci_1351: Transcriptional regulator for vanillate metabolism, GntR family |
*
Polaromonas naphthalenivorans CJ2 Site: position = -137 score = 4.89898 sequence = TGTATACA Site: position = -201 score = 4.08248 sequence = TGAATACA Gene: Pnap_2731: Transcriptional regulator for vanillate metabolism, GntR family |
Gene: Bpro_3386: Transcriptional regulator for vanillate metabolism, GntR family |
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*
Variovorax paradoxus S110 Site: position = -103 score = 4.08248 sequence = TGTGTACA Site: position = -38 score = 4.89898 sequence = TGTATACA Gene: Vapar_1746: Transcriptional regulator for vanillate metabolism, GntR family |
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Transcriptional regulator for vanillate metabolism, GntR family |
| Pnap_2730 |
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Gene: Pnap_2730: ABC transporter substrate-binding protein |
Gene: Bpro_3384: ABC transporter substrate-binding protein |
Gene: Rfer_0288: ABC transporter substrate-binding protein |
Gene: Vapar_1747: ABC transporter substrate-binding protein |
Gene: Veis_0159: ABC transporter substrate-binding protein |
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ABC transporter substrate-binding protein |
| CtesDRAFT_4799 |
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Gene: CtesDRAFT_4799: ABC transporter permease protein |
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Gene: Pnap_2729: ABC transporter permease protein |
2
Polaromonas sp. JS666 Gene: Bpro_5149: ABC transporter permease protein Gene: Bpro_3383: ABC transporter permease protein |
Gene: Rfer_0289: ABC transporter permease protein |
Gene: Vapar_1748: ABC transporter permease protein |
Gene: Veis_0160: ABC transporter permease protein |
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ABC transporter permease protein |
| CtesDRAFT_4800 |
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Gene: CtesDRAFT_4800: ABC transporter permease protein |
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Gene: Pnap_2728: ABC transporter permease protein |
2
Polaromonas sp. JS666 Gene: Bpro_5148: ABC transporter permease protein Gene: Bpro_3382: ABC transporter permease protein |
Gene: Rfer_0290: ABC transporter permease protein |
Gene: Vapar_1749: ABC transporter permease protein |
Gene: Veis_0161: ABC transporter permease protein |
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ABC transporter permease protein |
| CtesDRAFT_4801 |
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Comamonas testosteroni KF-1 Site: position = -150 score = 4.08248 sequence = TGTTTACA Gene: CtesDRAFT_4801: ABC transporter ATP-binding protein |
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Gene: Pnap_2727: ABC transporter ATP-binding protein |
2
Polaromonas sp. JS666 Gene: Bpro_3381: ABC transporter ATP-binding protein Gene: Bpro_5147: ABC transporter ATP-binding protein |
Gene: Rfer_0291: ABC transporter ATP-binding protein |
Gene: Vapar_1750: ABC transporter ATP-binding protein |
Gene: Veis_0162: ABC transporter ATP-binding protein |
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ABC transporter ATP-binding protein |
| CtesDRAFT_4802 |
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Gene: CtesDRAFT_4802: ABC transporter ATP-binding protein |
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Gene: Pnap_2726: ABC transporter ATP-binding protein |
2
Polaromonas sp. JS666 Gene: Bpro_3380: ABC transporter ATP-binding protein Gene: Bpro_5146: ABC transporter ATP-binding protein |
Gene: Rfer_0292: ABC transporter ATP-binding protein |
Gene: Vapar_1751: ABC transporter ATP-binding protein |
Gene: Veis_0163: ABC transporter ATP-binding protein |
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ABC transporter ATP-binding protein |
| vanA |
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Gene: CtesDRAFT_3109: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
Gene: Daci_1352: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
Gene: Pnap_2725: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
*
Polaromonas sp. JS666 Site: position = -18 score = 4.89898 sequence = TGTATACA Site: position = -81 score = 4.08248 sequence = TGAATACA Gene: Bpro_3387: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
Gene: Rfer_0280: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
Gene: Vapar_5693: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -82 score = 4.08248 sequence = TGTGTACA Site: position = 1 score = 4.08248 sequence = TGTATCCA Gene: Veis_1485: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Gene: Lcho_1335: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| vanB |
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Gene: CtesDRAFT_1076: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Daci_1356: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Pnap_2724: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Bpro_3385: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Rfer_0281: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Vapar_5694: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Gene: Veis_1371: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Gene: Lcho_1334: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |