Regulog VanR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | ||
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | 3 | 2 |
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | 3 | 2 |
| Reinekea sp. MED297 | ||
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| vanR |
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Marinomonas sp. MWYL1 Site: position = -195 score = 5.51815 sequence = ATTGGATCCAAT Site: position = -143 score = 5.37299 sequence = ATTGGATCCATT Site: position = -134 score = 3.73581 sequence = ATTTGATGCATA Site: position = -74 score = 5.51815 sequence = ATTGGATCCAAT Gene: Mmwyl1_1295: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Chromohalobacter salexigens DSM 3043 Site: position = -91 score = 5.03557 sequence = TTTGGATCCAAA Site: position = -39 score = 4.64244 sequence = GTTGGATCCAAA Gene: Csal_0345: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
| CRON 2. | |||||||||||||
| vanA |
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Marinomonas sp. MWYL1 Site: position = -161 score = 5.51815 sequence = ATTGGATCCAAT Site: position = -101 score = 3.74145 sequence = TATGCATCAAAT Site: position = -92 score = 5.41207 sequence = AATGGATCCAAT Site: position = -40 score = 5.51815 sequence = ATTGGATCCAAT Gene: Mmwyl1_1296: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Chromohalobacter salexigens DSM 3043 Site: position = -47 score = 5.03557 sequence = TTTGGATCCAAA Site: position = -99 score = 4.91389 sequence = TTTGGATCCAAC Gene: Csal_0344: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| vanB |
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Gene: Mmwyl1_1297: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Gene: Csal_0343: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |