Regulog RutR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Psychromonadaceae/Aeromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3
Moritella sp. PE36	8	4
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Tolumonas auensis DSM 9187

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
rutR	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -155 score = 4.12949 sequence = AACTGACTCCCGGGTCAAGT Gene: PE36_18369: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Transcriptional regulator RutR of pyrimidine catabolism, TetR family

CRON 2.
pbuT	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -379 score = 5.29469 sequence = TATTGACCATCAAGTCAATT Gene: PE36_19145: Xanthine/uracil permease	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Xanthine/uracil permease
xpt	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_19150: Xanthine phosphoribosyltransferase (EC 2.4.2.22)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Xanthine phosphoribosyltransferase (EC 2.4.2.22)

CRON 3.
xdhA	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -118 score = 5.11861 sequence = ACTTGACTCGAGGGTCAGGT Gene: PE36_18399: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
xdhB	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_18394: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
xdhC	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_18389: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
guaD	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_18384: Guanine deaminase (EC 3.5.4.3)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Guanine deaminase (EC 3.5.4.3)

CRON 4.
gpt	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -146 score = 4.74783 sequence = ACTTGTCCCAAGGGTCAAGT Gene: PE36_22205: Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_3424: Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_0890: Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	Tolumonas auensis DSM 9187 Gene: Tola_0808: Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RutR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --