Regulog T-box(Ile) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Ile-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Ile-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1	1	1
Lactobacillus reuteri JCM 1112	2	2
Lactobacillus helveticus DPC 4571	2	2
Lactobacillus fermentum IFO 3956	2	2
Lactobacillus salivarius subsp. salivarius UCC118	2	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1	1
Lactobacillus acidophilus NCFM	6	4
Lactobacillus johnsonii NCC 533	3	3
Lactobacillus plantarum WCFS1	2	2
Lactobacillus casei ATCC 334	1	1
Lactobacillus brevis ATCC 367	3	3
Lactobacillus sakei subsp. sakei 23K	1	1
Pediococcus pentosaceus ATCC 25745	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1	1
Lactobacillus rhamnosus GG	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
oppA	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	4 Lactobacillus acidophilus NCFM* Site: position = -499 score = 98.45 sequence = AAGAACAGCTTTGAT... Gene: LBA1216: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Gene: LBA1345: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Gene: LBA1346: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Site: position = -318 score = 92.85 sequence = TAATTTAGCTTTGAT... Gene: LBA1347: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	* Lactobacillus johnsonii NCC 533 Site: position = -318 score = 115.14 sequence = AAACAGCTTTGATAA... Gene: LJ1574: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -367 score = 84.72 sequence = TTAAAAAGTGATGAT... Gene: LVIS_0011: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1853: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)	Lactobacillus rhamnosus GG	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)

CRON 2.
ilvE	Oenococcus oeni PSU-1 Gene: OEOE_1296: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571 Gene: lhv_1426: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	2 Lactobacillus fermentum IFO 3956* Site: position = -444 score = 90.89 sequence = AAACAACGCGATGAG... Gene: LAF_0922: Branched-chain amino acid aminotransferase (EC 2.6.1.42) Gene: LAF_0347: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0063: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1219: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus acidophilus NCFM Gene: LBA1341: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2390: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus casei ATCC 334 Gene: LSEI_2041: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus brevis ATCC 367	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1319: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Lactobacillus rhamnosus GG Gene: LGG_02028: Branched-chain amino acid aminotransferase (EC 2.6.1.42)	Branched-chain amino acid aminotransferase (EC 2.6.1.42)

CRON 3.
brnQ	Oenococcus oeni PSU-1 Gene: OEOE_0443: Branched-chain amino acid transport system carrier protein	* Lactobacillus reuteri JCM 1112 Site: position = -290 score = 109.58 sequence = CGATCGCAATGAGAA... Gene: LAR_1696: Branched-chain amino acid transport system carrier protein	* Lactobacillus helveticus DPC 4571 Site: position = -264 score = 116.23 sequence = TGAAAACAAAGAGAA... Gene: lhv_1189: Branched-chain amino acid transport system carrier protein	Lactobacillus fermentum IFO 3956	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -378 score = 97.76 sequence = AAAGAACGCAATGAG... Gene: LSL_1636: Branched-chain amino acid transport system carrier protein	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus acidophilus NCFM Site: position = -313 score = 99.92 sequence = TGAAAACAAAAAGAA... Gene: LBA1036: Branched-chain amino acid transport system carrier protein	* Lactobacillus johnsonii NCC 533 Site: position = -180 score = 95.0 sequence = TGAAAACAAAGAGAA... Gene: LJ1137: Branched-chain amino acid transport system carrier protein	* Lactobacillus plantarum WCFS1 Site: position = -349 score = 87.81 sequence = CAAACACGCCGATGA... Gene: lp_3466: Branched-chain amino acid transport system carrier protein	Lactobacillus casei ATCC 334 Gene: LSEI_0604: Branched-chain amino acid transport system carrier protein	* Lactobacillus brevis ATCC 367 Site: position = -289 score = 81.72 sequence = TTATAAAACGTTGAA... Gene: LVIS_2122: Branched-chain amino acid transport system carrier protein	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1440: Branched-chain amino acid transport system carrier protein	* Lactobacillus rhamnosus GG Site: position = -414 score = 87.86 sequence = TACAAATGCAACGCG... Gene: LGG_00575: Branched-chain amino acid transport system carrier protein	Branched-chain amino acid transport system carrier protein

CRON 4.
ileS	* Oenococcus oeni PSU-1 Site: position = -216 score = 53.75 sequence = TAATGACTTTATATT... Gene: OEOE_1139: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus reuteri JCM 1112 Site: position = -276 score = 90.72 sequence = TAAAATCGTTGAAGA... Gene: LAR_0578: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus helveticus DPC 4571 Site: position = -223 score = 68.51 sequence = TAAAAATTAGATTGA... Gene: lhv_0863: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus fermentum IFO 3956 Site: position = -273 score = 103.55 sequence = TAAAAGCATTGATGG... Gene: LAF_0582: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -274 score = 77.26 sequence = TAATTTATTTCTGAA... Gene: LSL_1042: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -242 score = 45.09 sequence = TTAATAAATCAGACT... Gene: LBUL_0681: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus acidophilus NCFM Site: position = -228 score = 62.3 sequence = AAATAATAATTAGAT... Gene: LBA0817: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus johnsonii NCC 533 Site: position = -204 score = 62.9 sequence = TTTAAGTCGACAGTA... Gene: LJ0980: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus plantarum WCFS1 Site: position = -284 score = 97.11 sequence = ATTGAATGTATTGAG... Gene: lp_2187: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus casei ATCC 334 Site: position = -252 score = 81.74 sequence = CAATAACGTATGAAC... Gene: LSEI_1280: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus brevis ATCC 367 Site: position = -356 score = 75.89 sequence = AATAATGGCATGAAG... Gene: LVIS_1441: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus sakei subsp. sakei 23K Site: position = -253 score = 98.65 sequence = AACAGACAATAACAA... Gene: LSA0756: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Pediococcus pentosaceus ATCC 25745 Site: position = -262 score = 123.77 sequence = GAATAAAACGTTAAA... Gene: PEPE_1179: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -308 score = 64.27 sequence = TATAAAAAGCGTAAC... Gene: LEUM_1487: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	* Lactobacillus rhamnosus GG Site: position = -248 score = 87.8 sequence = CAATAACGTATGAAC... Gene: LGG_01291: Isoleucyl-tRNA synthetase (EC 6.1.1.5)	Isoleucyl-tRNA synthetase (EC 6.1.1.5)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Ile) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --