Regulog T-box(Ile) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ile-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Ile-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| oppA |
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*4
Lactobacillus acidophilus NCFM Site: position = -499 score = 98.45 sequence = AAGAACAGCTTTGAT... Gene: LBA1216: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Gene: LBA1345: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Gene: LBA1346: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) Site: position = -318 score = 92.85 sequence = TAATTTAGCTTTGAT... Gene: LBA1347: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
*
Lactobacillus johnsonii NCC 533 Site: position = -318 score = 115.14 sequence = AAACAGCTTTGATAA... Gene: LJ1574: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Lactobacillus brevis ATCC 367 Site: position = -367 score = 84.72 sequence = TTAAAAAGTGATGAT... Gene: LVIS_0011: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Gene: LEUM_1853: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
| CRON 2. | ||||||||||||||||
| ilvE |
Gene: OEOE_1296: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: lhv_1426: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
*2
Lactobacillus fermentum IFO 3956 Site: position = -444 score = 90.89 sequence = AAACAACGCGATGAG... Gene: LAF_0922: Branched-chain amino acid aminotransferase (EC 2.6.1.42) Gene: LAF_0347: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: LSL_0063: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: LBUL_1219: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: LBA1341: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: lp_2390: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: LSEI_2041: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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Gene: LEUM_1319: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Gene: LGG_02028: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
| CRON 3. | ||||||||||||||||
| brnQ |
Gene: OEOE_0443: Branched-chain amino acid transport system carrier protein |
*
Lactobacillus reuteri JCM 1112 Site: position = -290 score = 109.58 sequence = CGATCGCAATGAGAA... Gene: LAR_1696: Branched-chain amino acid transport system carrier protein |
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Lactobacillus helveticus DPC 4571 Site: position = -264 score = 116.23 sequence = TGAAAACAAAGAGAA... Gene: lhv_1189: Branched-chain amino acid transport system carrier protein |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -378 score = 97.76 sequence = AAAGAACGCAATGAG... Gene: LSL_1636: Branched-chain amino acid transport system carrier protein |
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Lactobacillus acidophilus NCFM Site: position = -313 score = 99.92 sequence = TGAAAACAAAAAGAA... Gene: LBA1036: Branched-chain amino acid transport system carrier protein |
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Lactobacillus johnsonii NCC 533 Site: position = -180 score = 95.0 sequence = TGAAAACAAAGAGAA... Gene: LJ1137: Branched-chain amino acid transport system carrier protein |
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Lactobacillus plantarum WCFS1 Site: position = -349 score = 87.81 sequence = CAAACACGCCGATGA... Gene: lp_3466: Branched-chain amino acid transport system carrier protein |
Gene: LSEI_0604: Branched-chain amino acid transport system carrier protein |
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Lactobacillus brevis ATCC 367 Site: position = -289 score = 81.72 sequence = TTATAAAACGTTGAA... Gene: LVIS_2122: Branched-chain amino acid transport system carrier protein |
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Gene: LEUM_1440: Branched-chain amino acid transport system carrier protein |
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Lactobacillus rhamnosus GG Site: position = -414 score = 87.86 sequence = TACAAATGCAACGCG... Gene: LGG_00575: Branched-chain amino acid transport system carrier protein |
Branched-chain amino acid transport system carrier protein |
| CRON 4. | ||||||||||||||||
| ileS |
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Oenococcus oeni PSU-1 Site: position = -216 score = 53.75 sequence = TAATGACTTTATATT... Gene: OEOE_1139: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus reuteri JCM 1112 Site: position = -276 score = 90.72 sequence = TAAAATCGTTGAAGA... Gene: LAR_0578: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus helveticus DPC 4571 Site: position = -223 score = 68.51 sequence = TAAAAATTAGATTGA... Gene: lhv_0863: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus fermentum IFO 3956 Site: position = -273 score = 103.55 sequence = TAAAAGCATTGATGG... Gene: LAF_0582: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -274 score = 77.26 sequence = TAATTTATTTCTGAA... Gene: LSL_1042: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -242 score = 45.09 sequence = TTAATAAATCAGACT... Gene: LBUL_0681: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus acidophilus NCFM Site: position = -228 score = 62.3 sequence = AAATAATAATTAGAT... Gene: LBA0817: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus johnsonii NCC 533 Site: position = -204 score = 62.9 sequence = TTTAAGTCGACAGTA... Gene: LJ0980: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus plantarum WCFS1 Site: position = -284 score = 97.11 sequence = ATTGAATGTATTGAG... Gene: lp_2187: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus casei ATCC 334 Site: position = -252 score = 81.74 sequence = CAATAACGTATGAAC... Gene: LSEI_1280: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus brevis ATCC 367 Site: position = -356 score = 75.89 sequence = AATAATGGCATGAAG... Gene: LVIS_1441: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -253 score = 98.65 sequence = AACAGACAATAACAA... Gene: LSA0756: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -262 score = 123.77 sequence = GAATAAAACGTTAAA... Gene: PEPE_1179: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -308 score = 64.27 sequence = TATAAAAAGCGTAAC... Gene: LEUM_1487: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
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Lactobacillus rhamnosus GG Site: position = -248 score = 87.8 sequence = CAATAACGTATGAAC... Gene: LGG_01291: Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
Isoleucyl-tRNA synthetase (EC 6.1.1.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |