Regulog Rex - Deinococcus-Thermus

Properties
Regulator type:	Transcription factor
Regulator family:	Rex
Regulation mode:	repressor
Biological process:	Energy metabolism
Effector:	NADH
Phylum:	Deinococcus-Thermus
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By trascription factor - Rex
By taxonomy - Deinococcus-Thermus
By TF family - Rex
By effector - NADH
By pathway - Energy metabolism

Statistics of regulated genes
Genome	Genes	Operons
Deinococcus deserti VCD115	17	3
Deinococcus geothermalis DSM 11300	17	3
Deinococcus radiodurans R1	16	2
Thermus aquaticus Y51MC23	13	1
Thermus thermophilus HB27	13	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
nadC	* Deinococcus deserti VCD115 Site: position = -37 score = 5.35652 sequence = GCGTGATTTCTCTCACAA Gene: Deide_13560: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	* Deinococcus geothermalis DSM 11300 Site: position = -46 score = 5.41994 sequence = ACGTGATTTCGTTCACGA Gene: Dgeo_1163: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5291: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Thermus thermophilus HB27 Gene: TTC0621: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
nadA	Deinococcus deserti VCD115 Gene: Deide_13570: Quinolinate synthetase (EC 4.1.99.-)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_1164: Quinolinate synthetase (EC 4.1.99.-)	Deinococcus radiodurans R1	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_5288: Quinolinate synthetase (EC 4.1.99.-)	Thermus thermophilus HB27 Gene: TTC0620: Quinolinate synthetase (EC 4.1.99.-)	Quinolinate synthetase (EC 4.1.99.-)

CRON 2.
nuoA	* Deinococcus deserti VCD115 Site: position = -87 score = 5.18375 sequence = TCGTGCGGTTTTTCACGT Gene: Deide_05090: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Deinococcus geothermalis DSM 11300 Site: position = -83 score = 5.56036 sequence = TCGTGCGTTTTTTCACGA Gene: Dgeo_0909: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Deinococcus radiodurans R1 Site: position = 56 score = 4.69162 sequence = TCGTGCCTCTTTTCACGA Gene: DR1506: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Thermus aquaticus Y51MC23 Site: position = -30 score = 5.01871 sequence = TCGTGAAGAGAGGCACGA Gene: TaqDRAFT_4255: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	* Thermus thermophilus HB27 Site: position = -30 score = 5.01871 sequence = TCGTGAAGAAAGGCACGA Gene: TTC1920: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
nuoB	Deinococcus deserti VCD115 Gene: Deide_05100: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0910: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1505: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4256: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1919: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
nuoC	Deinococcus deserti VCD115 Gene: Deide_05110: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0911: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1504: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4257: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1918: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
nuoD	Deinococcus deserti VCD115 Gene: Deide_05120: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0912: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1503: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4258: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1917: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
DR1502	Deinococcus deserti VCD115	Deinococcus geothermalis DSM 11300	Deinococcus radiodurans R1 Gene: DR1502: hypothetical protein	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	hypothetical protein
nuoE	Deinococcus deserti VCD115 Gene: Deide_05130: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0913: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1501: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4259: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1916: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
nuoF	Deinococcus deserti VCD115 Gene: Deide_05140: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0914: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1500: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4260: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1915: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
nuoG	Deinococcus deserti VCD115 Gene: Deide_05150: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0915: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1499: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4261: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1914: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
nuoH	Deinococcus deserti VCD115 Gene: Deide_05160: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0916: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1498: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4262: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1913: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
nuoI	Deinococcus deserti VCD115 Gene: Deide_05170: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0917: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1497: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4263: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1912: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
nuoJ	Deinococcus deserti VCD115 Gene: Deide_05180: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0918: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1496: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4264: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1911: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
nuoK	Deinococcus deserti VCD115 Gene: Deide_05190: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0919: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1495: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4265: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1910: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
nuoL	Deinococcus deserti VCD115 Gene: Deide_05200: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0920: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1494: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4266: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1909: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
nuoM	Deinococcus deserti VCD115 Gene: Deide_05210: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0921: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1493: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Thermus aquaticus Y51MC23 Gene: TaqDRAFT_4267: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	Thermus thermophilus HB27 Gene: TTC1908: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
nuoN	Deinococcus deserti VCD115 Gene: Deide_05220: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Deinococcus geothermalis DSM 11300 Gene: Dgeo_0922: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Deinococcus radiodurans R1 Gene: DR1492: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)

CRON 3.
ndh	* Deinococcus deserti VCD115 Site: position = -29 score = 5.81968 sequence = TCGTGAATTCGTTCACAG Gene: Deide_06790: NADH dehydrogenase (EC 1.6.99.3)	* Deinococcus geothermalis DSM 11300 Site: position = -28 score = 5.71423 sequence = TCGTGAATTCCTTCACAG Gene: Dgeo_1949: NADH dehydrogenase (EC 1.6.99.3)	* Deinococcus radiodurans R1 Site: position = -29 score = 5.90616 sequence = TCGTGAATACTTTCACAG Gene: DR0950: NADH dehydrogenase (EC 1.6.99.3)	Thermus aquaticus Y51MC23	Thermus thermophilus HB27	NADH dehydrogenase (EC 1.6.99.3)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Rex - Deinococcus-Thermus

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --