Regulog UxuR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - ExuR/UxuR
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | ||
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | 9 | 3 |
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | ||
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| uxuP |
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Marinomonas sp. MWYL1 Site: position = -136 score = 4.42671 sequence = ATTTTGGTCAACTAACTT Site: position = -114 score = 5.56865 sequence = AGATTGGTTGACCAAATT Gene: Mmwyl1_2784: predicted glucuronate TRAP transporter, periplasmic subunit |
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predicted glucuronate TRAP transporter, periplasmic subunit |
| uxuR |
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Gene: Mmwyl1_2785: D-glucuronate repressor, GntR family |
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D-glucuronate repressor, GntR family |
| CRON 2. | |||||||||||||
| uxuQ |
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Marinomonas sp. MWYL1 Site: position = -90 score = 4.63181 sequence = AAGTTAGTTGACCAAAAT Site: position = -112 score = 5.35598 sequence = AATTTGGTCAACCAATCT Gene: Mmwyl1_2783: predicted glucuronate TRAP transporter, small subunit |
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predicted glucuronate TRAP transporter, small subunit |
| uxuM |
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Gene: Mmwyl1_2782: predicted glucuronate TRAP transporter, large subunit |
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predicted glucuronate TRAP transporter, large subunit |
| lfaA |
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Gene: Mmwyl1_2781: Alpha-glucosidase (EC 3.2.1.20) |
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Alpha-glucosidase (EC 3.2.1.20) |
| uxaC |
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Gene: Mmwyl1_2780: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| uxuB |
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Gene: Mmwyl1_2779: D-mannonate oxidoreductase (EC 1.1.1.57) |
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D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxuA |
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Gene: Mmwyl1_2778: Mannonate dehydratase (EC 4.2.1.8) |
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Mannonate dehydratase (EC 4.2.1.8) |
| CRON 3. | |||||||||||||
| bglX |
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Marinomonas sp. MWYL1 Site: position = -163 score = 4.41779 sequence = TTAAAGGTGGACCAAATT Gene: Mmwyl1_3059: Periplasmic beta-glucosidase precursor |
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Periplasmic beta-glucosidase precursor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |