Regulog TyrR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator (repressor) |
| Biological process: | Aromatic amino acid metabolism |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - TyrR
- By taxonomy - Psychromonadaceae/Aeromonadales
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Aromatic amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | 2 | 2 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 9 | 4 |
| Aeromonas salmonicida subsp. salmonicida A449 | 6 | 4 |
| Tolumonas auensis DSM 9187 | 2 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| tyrP |
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|
*
Moritella sp. PE36 Site: position = -78 score = 5.50476 sequence = TTGTAAACATAAGTTTACAC Site: position = -196 score = 4.60315 sequence = CTGTAAATATTAGTTTCCAA Gene: PE36_13494: Tyrosine-specific transport protein |
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Tyrosine-specific transport protein |
| CRON 2. | |||||||
| tyrR |
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|
*
Moritella sp. PE36 Site: position = -58 score = 4.01254 sequence = GTTGATACTGCCGTTTACAT Gene: PE36_04363: Transcriptional regulator of aromatic amino acid biosynthesis |
Gene: AHA_1886: Transcriptional regulator of aromatic amino acid biosynthesis |
Gene: ASA_2418: Transcriptional regulator of aromatic amino acid biosynthesis |
Gene: Tola_1927: Transcriptional regulator of aromatic amino acid biosynthesis |
Transcriptional regulator of aromatic amino acid biosynthesis |
| CRON 3. | |||||||
| aroF |
|
|
Gene: PE36_04938: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -59 score = 4.83986 sequence = GTGTAAATAAAAATGAACGG Site: position = -238 score = 4.51427 sequence = GCGTAATCATATGTTTACGT Gene: AHA_1654: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -60 score = 5.42888 sequence = GTGTAAATAAATGAATACAC Site: position = -239 score = 5.36617 sequence = ATGTAACTATATATTTACGA Gene: ASA_2704: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
*
Tolumonas auensis DSM 9187 Site: position = -32 score = 5.55862 sequence = GTGTAAAGATAAGTTTACAG Site: position = -69 score = 4.05116 sequence = ATGTCAATACAAGATTAAAA Gene: Tola_1376: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
| tyrA |
|
|
Gene: PE36_04928: Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) # AroHI/TyrAc, NAD-specific |
Gene: AHA_1655: Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) # AroHI/TyrAc, NAD-specific |
Gene: ASA_2703: Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) # AroHI/TyrAc, NAD-specific |
Gene: Tola_1377: Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) # AroHI/TyrAc, NAD-specific |
Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) # AroHI/TyrAc, NAD-specific |
| CRON 4. | |||||||
| aroG |
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|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -82 score = 5.68918 sequence = ATGTAATTTTCTATTTACAC Gene: AHA_1980: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -82 score = 5.68918 sequence = ATGTAATTTTCTATTTACAC Gene: ASA_1860: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) |
Gene: Tola_1390: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) |
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) |
| CRON 5. | |||||||
| phhA |
|
|
Gene: PE36_05048: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -146 score = 5.36319 sequence = TTGTCACAAATTATTTACAA Gene: AHA_1883: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -136 score = 5.36319 sequence = TTGTCACAAATTGTTTACAA Gene: ASA_2420: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
| phhB |
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|
Gene: PE36_05053: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: AHA_1884: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: ASA_2419: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
| CRON 6. | |||||||
| hpd |
|
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Gene: PE36_16244: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -180 score = 5.27011 sequence = ATGTCACAATCTATTTACAT Site: position = -91 score = 4.38097 sequence = ATGAAACAAGTTGTTAACAA Gene: AHA_2663: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -112 score = 4.38097 sequence = ATGAAACAAGTTGTTAACAA Site: position = -201 score = 5.27011 sequence = ATGTCACAATCTATTTACAT Gene: ASA_2519: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
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4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) |
| hmgA |
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Gene: PE36_16239: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
Gene: AHA_2662: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
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Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
| hmgC |
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Gene: PE36_16234: Fumarylacetoacetase (EC 3.7.1.2) |
Gene: AHA_2661: Fumarylacetoacetase (EC 3.7.1.2) |
Gene: ASA_2517: Fumarylacetoacetase (EC 3.7.1.2) |
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Fumarylacetoacetase (EC 3.7.1.2) |
| hmgB |
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Gene: PE36_16229: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: AHA_2660: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: ASA_2516: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|
Maleylacetoacetate isomerase (EC 5.2.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |