Regulog NtrC - Moraxellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 27 sites [see more]

Member of regulog collections

By taxonomy - Moraxellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Acinetobacter sp. ADP1	13	6
Acinetobacter baumannii AB0057	6	4
Psychrobacter arcticum 273-4	2	2
Psychrobacter sp. PRwf-1	4	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
COG0733	Acinetobacter sp. ADP1	Acinetobacter baumannii AB0057	* Psychrobacter arcticum 273-4 Site: position = -106 score = 4.29744 sequence = TGCGTCACATTGATGCA Gene: Psyc_1525: Predicted sodium dependent transporter	* Psychrobacter sp. PRwf-1 Site: position = -282 score = 4.60448 sequence = TGATTCATTATTAAGCA Gene: PsycPRwf_1792: Predicted sodium dependent transporter	Predicted sodium dependent transporter

CRON 2.
rutA	* Acinetobacter sp. ADP1 Site: position = -245 score = 4.55953 sequence = TGCACATTATTGAATCA Site: position = -212 score = 4.8145 sequence = TGCAGCAAAATGATTCA Gene: ACIAD0027: Pyrimidine oxygenase	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Pyrimidine oxygenase
rutB	Acinetobacter sp. ADP1 Gene: ACIAD0028: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
rutC	Acinetobacter sp. ADP1 Gene: ACIAD0029: Aminoacrylate peracid reductase	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Aminoacrylate peracid reductase
rutF	Acinetobacter sp. ADP1 Gene: ACIAD0030: Flavin reductase	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Flavin reductase
rutG	Acinetobacter sp. ADP1 Gene: ACIAD0031: Uracil permease	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Uracil permease
rutE2	Acinetobacter sp. ADP1 Gene: ACIAD0032: 3-hydroxy propionic acid dehydrogenase	Acinetobacter baumannii AB0057	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	3-hydroxy propionic acid dehydrogenase

CRON 3.
rutR	* Acinetobacter sp. ADP1 Site: position = -224 score = 4.55953 sequence = TGATTCAATAATGTGCA Site: position = -257 score = 4.8145 sequence = TGAATCATTTTGCTGCA Gene: ACIAD0026: Pyrimidine catabolism transcriptional regulator RutR, TetR family	Acinetobacter baumannii AB0057 Gene: AB57_0065: Pyrimidine catabolism transcriptional regulator RutR, TetR family	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	Pyrimidine catabolism transcriptional regulator RutR, TetR family

CRON 4.
gdhA	* Acinetobacter sp. ADP1 Site: position = -230 score = 4.5939 sequence = TGATCAAAATAGATGCA Site: position = -208 score = 4.72818 sequence = TGCATCATAATGAGTCA Site: position = -39 score = 5.01454 sequence = TGCACAATATTGATTCA Gene: ACIAD1110: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Acinetobacter baumannii AB0057 Site: position = -174 score = 4.82661 sequence = TGCACAATAATAGATCA Site: position = -24 score = 4.48423 sequence = TGCTGCTAAATGATGCA Site: position = 6 score = 5.10638 sequence = TGCACCAATTTAATTCA Gene: AB57_1107: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Psychrobacter arcticum 273-4	Psychrobacter sp. PRwf-1	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)

CRON 5.
gltB	* Acinetobacter sp. ADP1 Site: position = -403 score = 4.72486 sequence = TGCACTATTTTGGTTCG Site: position = -432 score = 4.25105 sequence = AGCATTAATTTTGATCA Gene: ACIAD3350: Glutamate synthase, large chain (EC 1.4.1.13)	* Acinetobacter baumannii AB0057 Site: position = -446 score = 5.0432 sequence = TGCTCTAAAATAGTGCA Gene: AB57_3640: Glutamate synthase, large chain (EC 1.4.1.13)	Psychrobacter arcticum 273-4 Gene: Psyc_1874: Glutamate synthase, large chain (EC 1.4.1.13)	Psychrobacter sp. PRwf-1 Gene: PsycPRwf_0403: Glutamate synthase, large chain (EC 1.4.1.13)	Glutamate synthase, large chain (EC 1.4.1.13)
gltD	Acinetobacter sp. ADP1 Gene: ACIAD3349: Glutamate synthase, small chain (EC 1.4.1.13)	Acinetobacter baumannii AB0057 Gene: AB57_3639: Glutamate synthase, small chain (EC 1.4.1.13)	Psychrobacter arcticum 273-4 Gene: Psyc_1873: Glutamate synthase, small chain (EC 1.4.1.13)	Psychrobacter sp. PRwf-1 Gene: PsycPRwf_0404: Glutamate synthase, small chain (EC 1.4.1.13)	Glutamate synthase, small chain (EC 1.4.1.13)

CRON 6.
ntrB	* Acinetobacter sp. ADP1 Site: position = -217 score = 4.05665 sequence = TGCACCAAAATAATACT Gene: ACIAD1369: Nitrogen regulation protein ntrB (EC 2.7.3.-)	* Acinetobacter baumannii AB0057 Site: position = -219 score = 4.80101 sequence = TGCACCAAGTTGGATCA Gene: AB57_2323: Nitrogen regulation protein ntrB (EC 2.7.3.-)	Psychrobacter arcticum 273-4 Gene: Psyc_1537: Nitrogen regulation protein ntrB (EC 2.7.3.-)	* Psychrobacter sp. PRwf-1 Site: position = -93 score = 4.58406 sequence = TGAGCCAATTTGGCGCA Site: position = -168 score = 4.80705 sequence = TGCACTAAAATAAATCA Site: position = -137 score = 4.66285 sequence = TGCACTATTTATGAGCA Gene: PsycPRwf_1804: Nitrogen regulation protein ntrB (EC 2.7.3.-)	Nitrogen regulation protein ntrB (EC 2.7.3.-)
ntrC	Acinetobacter sp. ADP1 Gene: ACIAD1368: Nitrogen regulation protein NR(I)	Acinetobacter baumannii AB0057 Gene: AB57_2324: Nitrogen regulation protein NR(I)	Psychrobacter arcticum 273-4 Gene: Psyc_1538: Nitrogen regulation protein NR(I)	Psychrobacter sp. PRwf-1 Gene: PsycPRwf_1805: Nitrogen regulation protein NR(I)	Nitrogen regulation protein NR(I)

CRON 7.
glnA	* Acinetobacter sp. ADP1 Site: position = -239 score = 4.79667 sequence = TGCACCAATATGATGCT Site: position = -188 score = 4.63007 sequence = TGATTGAATATGGTGCA Gene: ACIAD2458: Glutamine synthetase type I (EC 6.3.1.2)	* Acinetobacter baumannii AB0057 Site: position = -240 score = 5.01167 sequence = TGCACCAAATTAGGGCA Site: position = -188 score = 3.89647 sequence = TGTGTGAATATGGTGCA Gene: AB57_2783: Glutamine synthetase type I (EC 6.3.1.2)	* Psychrobacter arcticum 273-4 Site: position = -462 score = 4.28518 sequence = TGCACTTTTATAGTGCT Gene: Psyc_0975: Glutamine synthetase type I (EC 6.3.1.2)	* Psychrobacter sp. PRwf-1 Site: position = -447 score = 4.79213 sequence = TGCACAATATTGGTGCG Site: position = -414 score = 4.21118 sequence = TGCCCTAATTTGGTTTA Gene: PsycPRwf_1645: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Moraxellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --