Regulog NagQ - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	N-acetylglucosamine utilization
Effector:	N-acetylglucosamine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - NagQ
By TF family - GntR/Others
By effector - N-acetylglucosamine
By pathway - N-acetylglucosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396	8	2
Marinobacter aqueolei
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1	8	2
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297	9	5
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
MED297_20052	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -78 score = 4.92668 sequence = TGGTTTTGTGGTGGTATC Gene: MED297_20052: Predicted N-acetylglucosamine transporter	Alcanivorax borkumensis SK2	Predicted N-acetylglucosamine transporter

CRON 2.
CJA_3023	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107 Gene: CJA_3023: Hypothetical protein	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -44 score = 5.91114 sequence = AGGTATTATATTGGTATT Gene: MED297_05914: Hypothetical protein	Alcanivorax borkumensis SK2	Hypothetical protein

CRON 3.
nagT	* Hahella chejuensis KCTC 2396 Site: position = -233 score = -0.237566 sequence = AATACCTTTTTAATACCA Gene: HCH_06982: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	* Marinomonas sp. MWYL1 Site: position = -86 score = -0.889976 sequence = AATACCTAAAAAATACCA Site: position = -192 score = -0.451649 sequence = AAAACCAATATAGAACCA Gene: Mmwyl1_1651: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein
nagU	Hahella chejuensis KCTC 2396 Gene: HCH_06981: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1650: N-Acetyl-D-glucosamine ABC transport system, permease protein 1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-Acetyl-D-glucosamine ABC transport system, permease protein 1
nagV	Hahella chejuensis KCTC 2396 Gene: HCH_06980: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1649: N-Acetyl-D-glucosamine ABC transport system, permease protein 2	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-Acetyl-D-glucosamine ABC transport system, permease protein 2
nagW	Hahella chejuensis KCTC 2396 Gene: HCH_06979: N-Acetyl-D-glucosamine ABC transport system, ATP-binding component	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1648: N-Acetyl-D-glucosamine ABC transport system, ATP-binding component	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	N-Acetyl-D-glucosamine ABC transport system, ATP-binding component
nagQ	Hahella chejuensis KCTC 2396 Gene: HCH_06978: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1647: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297 Gene: MED297_03120: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family	Alcanivorax borkumensis SK2	Transcriptional regulator of N-Acetylglucosamine utilization, GntR family
nagK	Hahella chejuensis KCTC 2396 Gene: HCH_06985: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1653: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -73 score = 6.08695 sequence = TGGTATTAAATTGGTATT Gene: MED297_03115: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)	Alcanivorax borkumensis SK2	N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
nagA	Hahella chejuensis KCTC 2396 Gene: HCH_06986: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_1654: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	2 Reinekea sp. MED297 Gene: MED297_03130: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Gene: MED297_03125: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	Alcanivorax borkumensis SK2	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
nagB	* Hahella chejuensis KCTC 2396 Site: position = -77 score = 5.58712 sequence = TGGTATTAAAAAGGTATT Gene: HCH_06984: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	* Marinomonas sp. MWYL1 Site: position = -49 score = 4.91939 sequence = TGGTTCTATATTGGTTTT Site: position = -155 score = 6.23953 sequence = TGGTATTTTTTAGGTATT Gene: Mmwyl1_1652: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297 Gene: MED297_03135: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	Alcanivorax borkumensis SK2	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)

CRON 4.
cdxA	Hahella chejuensis KCTC 2396 Gene: HCH_01137: Chitodextrinase precursor (EC 3.2.1.14)	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -51 score = 5.77401 sequence = AGGTATTTAATTGGTATT Gene: MED297_11870: Chitodextrinase precursor (EC 3.2.1.14)	Alcanivorax borkumensis SK2	Chitodextrinase precursor (EC 3.2.1.14)

CRON 5.
chiA	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40 Gene: Sde_3605: Chitinase (EC 3.2.1.14)	Teredinibacter turnerae T7901 Gene: TERTU_0285: Chitinase (EC 3.2.1.14)	Cellvibrio japonicus Ueda107 Gene: CJA_2611: Chitinase (EC 3.2.1.14)	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -144 score = -2.12483 sequence = AATGCCAAAGAGATACCA Gene: MED297_00800: Chitinase (EC 3.2.1.14)	Alcanivorax borkumensis SK2	Chitinase (EC 3.2.1.14)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NagQ - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --