Regulog NagQ - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - NagQ
- By TF family - GntR/Others
- By effector - N-acetylglucosamine
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 8 | 2 |
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | 8 | 2 |
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | 9 | 5 |
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| MED297_20052 |
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Reinekea sp. MED297 Site: position = -78 score = 4.92668 sequence = TGGTTTTGTGGTGGTATC Gene: MED297_20052: Predicted N-acetylglucosamine transporter |
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Predicted N-acetylglucosamine transporter |
| CRON 2. | |||||||||||||
| CJA_3023 |
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Gene: CJA_3023: Hypothetical protein |
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Reinekea sp. MED297 Site: position = -44 score = 5.91114 sequence = AGGTATTATATTGGTATT Gene: MED297_05914: Hypothetical protein |
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Hypothetical protein |
| CRON 3. | |||||||||||||
| nagT |
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Hahella chejuensis KCTC 2396 Site: position = -233 score = -0.237566 sequence = AATACCTTTTTAATACCA Gene: HCH_06982: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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Marinomonas sp. MWYL1 Site: position = -86 score = -0.889976 sequence = AATACCTAAAAAATACCA Site: position = -192 score = -0.451649 sequence = AAAACCAATATAGAACCA Gene: Mmwyl1_1651: N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
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N-Acetyl-D-glucosamine ABC transport system, sugar-binding protein |
| nagU |
Gene: HCH_06981: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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Gene: Mmwyl1_1650: N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 1 |
| nagV |
Gene: HCH_06980: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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Gene: Mmwyl1_1649: N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
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N-Acetyl-D-glucosamine ABC transport system, permease protein 2 |
| nagW |
Gene: HCH_06979: N-Acetyl-D-glucosamine ABC transport system, ATP-binding component |
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Gene: Mmwyl1_1648: N-Acetyl-D-glucosamine ABC transport system, ATP-binding component |
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N-Acetyl-D-glucosamine ABC transport system, ATP-binding component |
| nagQ |
Gene: HCH_06978: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: Mmwyl1_1647: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Gene: MED297_03120: Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
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Transcriptional regulator of N-Acetylglucosamine utilization, GntR family |
| nagK |
Gene: HCH_06985: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Gene: Mmwyl1_1653: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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Reinekea sp. MED297 Site: position = -73 score = 6.08695 sequence = TGGTATTAAATTGGTATT Gene: MED297_03115: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
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N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) |
| nagA |
Gene: HCH_06986: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: Mmwyl1_1654: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Reinekea sp. MED297 Gene: MED297_03130: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) Gene: MED297_03125: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagB |
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Hahella chejuensis KCTC 2396 Site: position = -77 score = 5.58712 sequence = TGGTATTAAAAAGGTATT Gene: HCH_06984: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Marinomonas sp. MWYL1 Site: position = -49 score = 4.91939 sequence = TGGTTCTATATTGGTTTT Site: position = -155 score = 6.23953 sequence = TGGTATTTTTTAGGTATT Gene: Mmwyl1_1652: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: MED297_03135: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| CRON 4. | |||||||||||||
| cdxA |
Gene: HCH_01137: Chitodextrinase precursor (EC 3.2.1.14) |
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Reinekea sp. MED297 Site: position = -51 score = 5.77401 sequence = AGGTATTTAATTGGTATT Gene: MED297_11870: Chitodextrinase precursor (EC 3.2.1.14) |
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Chitodextrinase precursor (EC 3.2.1.14) |
| CRON 5. | |||||||||||||
| chiA |
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Gene: Sde_3605: Chitinase (EC 3.2.1.14) |
Gene: TERTU_0285: Chitinase (EC 3.2.1.14) |
Gene: CJA_2611: Chitinase (EC 3.2.1.14) |
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Reinekea sp. MED297 Site: position = -144 score = -2.12483 sequence = AATGCCAAAGAGATACCA Gene: MED297_00800: Chitinase (EC 3.2.1.14) |
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Chitinase (EC 3.2.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |