Regulog NagC - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - NagC
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 1 | 1 |
| Psychromonas sp. CNPT3 | 3 | 2 |
| Moritella sp. PE36 | 8 | 4 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 8 | 3 |
| Aeromonas salmonicida subsp. salmonicida A449 | 8 | 3 |
| Tolumonas auensis DSM 9187 | 4 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| ptsH |
Gene: Ping_2439: Phosphocarrier protein of PTS system |
Gene: PCNPT3_08555: Phosphocarrier protein of PTS system |
*
Moritella sp. PE36 Site: position = -87 score = 5.95042 sequence = TTATTTTACTCTGTAAAATTA Gene: PE36_18600: Phosphocarrier protein of PTS system |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -228 score = 6.11858 sequence = TTATTTTTCGTTATAAAATAA Gene: AHA_3039: Phosphocarrier protein of PTS system |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -228 score = 6.11858 sequence = TTATTTTTCGTTATAAAATAA Gene: ASA_3060: Phosphocarrier protein of PTS system |
Gene: Tola_0626: Phosphocarrier protein of PTS system |
Phosphocarrier protein of PTS system |
| ptsI |
Gene: Ping_2440: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: PCNPT3_08565: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: PE36_18605: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: AHA_3040: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: ASA_3061: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: Tola_0625: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
| crr |
Gene: Ping_2441: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: PCNPT3_08575: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: PE36_18610: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: AHA_3041: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: ASA_3062: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: Tola_0624: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
PTS system, glucose-specific IIA component (EC 2.7.1.69) |
| CRON 2. | |||||||
| nagB |
Gene: Ping_0490: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
*
Psychromonas sp. CNPT3 Site: position = -52 score = 5.09286 sequence = TTAATTTACGCTGTGTATTAA Gene: PCNPT3_12872: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
*
Moritella sp. PE36 Site: position = -58 score = 5.98171 sequence = TTAATTTACAATTAAAAAAAA Gene: PE36_19400: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -86 score = 5.77583 sequence = TTTATTTACGCTATAAAACAA Gene: AHA_1526: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -86 score = 5.77583 sequence = TTTATTTACGCTATAAAACAA Gene: ASA_2828: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
*
Tolumonas auensis DSM 9187 Site: position = -50 score = 5.55065 sequence = TTTATTCACAATTAAAAATAA Gene: Tola_2136: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| nagA |
*
Psychromonas ingrahamii 37 Site: position = -161 score = 5.27689 sequence = CAATTTTCAATTGTAAAATAA Gene: Ping_0489: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: PCNPT3_12877: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: PE36_19405: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: AHA_1525: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: ASA_2829: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: Tola_2137: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| nagC |
Gene: Ping_0488: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
Gene: PCNPT3_12882: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
Gene: PE36_19410: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
Gene: AHA_1524: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
Gene: ASA_2830: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
Gene: Tola_2138: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
| CRON 3. | |||||||
| chi |
|
|
*
Moritella sp. PE36 Site: position = -172 score = 6.29526 sequence = TTATTTTACTCTGTAAAATAA Gene: PE36_05108: Chitodextrinase precursor |
|
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Chitodextrinase precursor |
| CRON 4. | |||||||
| nagE |
Gene: Ping_0491: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Psychromonas sp. CNPT3 Site: position = -257 score = 5.09286 sequence = TTAATACACAGCGTAAATTAA Gene: PCNPT3_12867: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Moritella sp. PE36 Site: position = -179 score = 5.98171 sequence = TTTTTTTTAATTGTAAATTAA Site: position = -53 score = 4.96808 sequence = TTACTTTACATTACGAAATAA Gene: PE36_19395: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -208 score = 5.77583 sequence = TTGTTTTATAGCGTAAATAAA Gene: AHA_1527: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -208 score = 5.77583 sequence = TTGTTTTATAGCGTAAATAAA Gene: ASA_2827: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
*
Tolumonas auensis DSM 9187 Site: position = -158 score = 5.55065 sequence = TTATTTTTAATTGTGAATAAA Gene: Tola_2135: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
| hex |
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Gene: PE36_11452: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: AHA_1528: Beta-hexosaminidase (EC 3.2.1.52) |
Gene: ASA_2826: Beta-hexosaminidase (EC 3.2.1.52) |
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Beta-hexosaminidase (EC 3.2.1.52) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |