Regulog HypR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 5 | 3 |
| Marinobacter aqueolei | ||
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | ||
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | 4 | 3 |
| Reinekea sp. MED297 | ||
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| hypO |
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Hahella chejuensis KCTC 2396 Site: position = -42 score = 4.94466 sequence = ATTTTATACAAT Gene: HCH_03166: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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Chromohalobacter salexigens DSM 3043 Site: position = -49 score = 4.94466 sequence = ATTTTATACAAT Gene: Csal_2708: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
| CRON 2. | |||||||||||||
| hypE |
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Hahella chejuensis KCTC 2396 Site: position = -129 score = 4.94466 sequence = ATTGTATAAAAT Gene: HCH_03167: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Chromohalobacter salexigens DSM 3043 Site: position = -45 score = 4.94466 sequence = ATTGTATAAAAT Gene: Csal_2705: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| hypD |
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Gene: Csal_2706: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| hypR |
Gene: HCH_03168: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Chromohalobacter salexigens DSM 3043 Site: position = -44 score = 4.0189 sequence = GTTGTATACAGT Gene: Csal_2707: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| CRON 3. | |||||||||||||
| hypD-related, COG329 (DapA) |
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Hahella chejuensis KCTC 2396 Site: position = -118 score = 5.32149 sequence = ATTGTATACAAT Gene: HCH_03163: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) |
| hypH-related, COG1012 (PutA) |
Gene: HCH_03162: Aldehyde dehydrogenase (EC 1.2.1.3), possibly ketoglutarate semialdehyde dehydrogenase |
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Aldehyde dehydrogenase (EC 1.2.1.3), possibly ketoglutarate semialdehyde dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |