Regulog HutC - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Histidine utilization |
| Effector: | cis-Urocanic acid |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - HutC
- By TF family - GntR/Others
- By effector - cis-Urocanic acid
- By pathway - Histidine utilization
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 6 | 3 |
| Magnetospirillum magnetotacticum MS-1 | ||
| Magnetospirillum magneticum AMB-1 | ||
| Azospirillum sp. B510 | 6 | 2 |
| Rhodospirillum centenum SW | 5 | 2 |
| Gluconacetobacter diazotrophicus PAl 5 | 2 | 2 |
| Acetobacter pasteurianus IFO 3283-01 | ||
| Gluconobacter oxydans 621H | 8 | 4 |
| Granulibacter bethesdensis CGDNIH1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| hisC |
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Gluconobacter oxydans 621H Site: position = -20 score = 5.4726 sequence = TGGTTGTATTTACAAGTT Gene: GOX1171: Histidinol-phosphate aminotransferase |
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Histidinol-phosphate aminotransferase |
| COG277 (GlcD) |
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Gene: GOX1170: FAD linked oxidase domain protein |
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FAD linked oxidase domain protein |
| hutD |
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Gene: GOX1169: Conserved hypothetical protein related to histidine degradation |
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Conserved hypothetical protein related to histidine degradation |
| CRON 2. | ||||||||||
| hutF |
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Rhodospirillum rubrum ATCC 11170 Site: position = -29 score = 3.13932 sequence = AGCTTGTCTATAATAAGA Gene: Rru_A1302: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Azospirillum sp. B510 Site: position = -49 score = 3.63402 sequence = GGGTTGCCTATACTTGTA Site: position = -29 score = 3.66272 sequence = GTGTTGTCTATAATAGCG Gene: AZL_c00080: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Rhodospirillum centenum SW Site: position = -96 score = 5.14078 sequence = AACCTGTATAGACAGCCA Gene: RC1_3235: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Gluconobacter oxydans 621H Site: position = -96 score = 5.42363 sequence = TGGTGGTATATACAAGTC Gene: GOX1164: Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
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Formiminoglutamic iminohydrolase (EC 3.5.3.13) |
| hutU |
Gene: Rru_A1304: Urocanate hydratase (EC 4.2.1.49) |
Gene: Magn03002210: Urocanate hydratase (EC 4.2.1.49) |
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Gene: AZL_c00110: Urocanate hydratase (EC 4.2.1.49) |
Gene: RC1_3236: Urocanate hydratase (EC 4.2.1.49) |
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Gluconobacter oxydans 621H Site: position = -35 score = 5.36928 sequence = TATTGGTATATACAAGTT Gene: GOX1166: Urocanate hydratase (EC 4.2.1.49) |
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Urocanate hydratase (EC 4.2.1.49) |
| hutG |
Gene: Rru_A1300: N-formylglutamate deformylase (EC 3.5.1.68) |
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Gene: AZL_c00060: N-formylglutamate deformylase (EC 3.5.1.68) |
Gene: RC1_3237: N-formylglutamate deformylase (EC 3.5.1.68) |
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Gene: GOX1165: N-formylglutamate deformylase (EC 3.5.1.68) |
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N-formylglutamate deformylase (EC 3.5.1.68) |
| hutH |
Gene: Rru_A1301: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: Magn03002209: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: AZL_c00070: Histidine ammonia-lyase (EC 4.3.1.3) |
Gene: RC1_3238: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gluconacetobacter diazotrophicus PAl 5 Site: position = -32 score = 4.62862 sequence = CCAATGTCTATACAAGTA Gene: Gdia_1458: Histidine ammonia-lyase (EC 4.3.1.3) |
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Gene: GOX1167: Histidine ammonia-lyase (EC 4.3.1.3) |
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Histidine ammonia-lyase (EC 4.3.1.3) |
| hutI |
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Rhodospirillum rubrum ATCC 11170 Site: position = -92 score = 3.90288 sequence = TCTTATTATAGACAAGCT Site: position = -82 score = 3.19801 sequence = GACAAGCTTATACAAGAT Gene: Rru_A1303: Imidazolonepropionase (EC 3.5.2.7) |
Gene: Magn03000759: Imidazolonepropionase (EC 3.5.2.7) |
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Azospirillum sp. B510 Site: position = -110 score = 3.59596 sequence = CGCTATTATAGACAACAC Site: position = -90 score = 3.79845 sequence = TACAAGTATAGGCAACCC Gene: AZL_c00090: Imidazolonepropionase (EC 3.5.2.7) |
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Rhodospirillum centenum SW Site: position = -68 score = 5.23653 sequence = TGGCTGTCTATACAGGTT Gene: RC1_3234: Imidazolonepropionase (EC 3.5.2.7) |
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Gluconobacter oxydans 621H Site: position = -50 score = 5.27693 sequence = GACTTGTATATACCACCA Gene: GOX1163: Imidazolonepropionase (EC 3.5.2.7) |
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Imidazolonepropionase (EC 3.5.2.7) |
| hutC |
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Rhodospirillum rubrum ATCC 11170 Site: position = -42 score = 4.69875 sequence = GTCCTGTATAGACAAGAG Gene: Rru_A1294: Histidine utilization repressor, GntR family |
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Gene: AZL_c00100: Histidine utilization repressor, GntR family |
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Gluconacetobacter diazotrophicus PAl 5 Site: position = -57 score = 5.3339 sequence = TGGTTGTATAGACACCCA Gene: Gdia_0721: Histidine utilization repressor, GntR family |
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Gene: GOX1162: Histidine utilization repressor, GntR family |
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Histidine utilization repressor, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |