Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PdhR - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudoalteromonas atlantica T6c 4 1
Alteromonas macleodii 'Deep ecotype' 4 1
Glaciecola sp. HTCC2999 8 2
Colwellia psychrerythraea 34H 7 2
Alteromonadales bacterium TW-7 7 2
Pseudoalteromonas haloplanktis TAC125 12 3
Pseudoalteromonas tunicata D2 7 2
Idiomarina baltica OS145 4 1
Idiomarina loihiensis L2TR 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
oadG
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3013: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02842: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Glaciecola sp. HTCC2999

Site:
position = -221
score = 6.04917
sequence = ATTGGTCTTACCAAT

Gene: GHTCC_010100009300: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
 
Colwellia psychrerythraea 34H

Gene: CPS_1048: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Alteromonadales bacterium TW-7

Site:
position = -118
score = 5.95911
sequence = ATTGGTTTTACCAAT

Gene: ATW7_11636: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -123
score = 5.95911
sequence = ATTGGTTTTACCAAT

Gene: PSHAa0538: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Pseudoalteromonas tunicata D2

Site:
position = -136
score = 5.95911
sequence = ATTGGTTTTACCAAT

Gene: PTD2_14632: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
 
Idiomarina baltica OS145

Gene: OS145_10570: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
 
Idiomarina loihiensis L2TR

Gene: IL1736: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3012: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02841: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100009305: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
*
Colwellia psychrerythraea 34H

Site:
position = -69
score = 4.6235
sequence = ATAAGTTTGACCAAT

Gene: CPS_1049: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_11631: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0539: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14637: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Idiomarina baltica OS145

Gene: OS145_10575: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Idiomarina loihiensis L2TR

Gene: IL1735: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
oadB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3011: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02840: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100009310: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Colwellia psychrerythraea 34H

Gene: CPS_1050: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Alteromonadales bacterium TW-7

Gene: ATW7_11626: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0540: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_14642: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Idiomarina baltica OS145

Gene: OS145_10580: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Idiomarina loihiensis L2TR

Gene: IL1734: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
CRON 2.
pdhR
*
Pseudoalteromonas atlantica T6c

Site:
position = -79
score = 6.04917
sequence = ATTGGTCTTACCAAT

Gene: Patl_3349: Pyruvate dehydrogenase complex repressor
*
Alteromonas macleodii 'Deep ecotype'

Site:
position = -104
score = 5.72313
sequence = AATGGTATTACCAAT

Gene: MADE_03226: Pyruvate dehydrogenase complex repressor
*
Glaciecola sp. HTCC2999

Site:
position = -71
score = 5.72313
sequence = AATGGTATTACCAAT

Gene: GHTCC_010100002754: Pyruvate dehydrogenase complex repressor
*
Colwellia psychrerythraea 34H

Site:
position = -91
score = 6.04917
sequence = ATTGGTCTTACCAAT

Site:
position = -244
score = 5.70124
sequence = ATTGGTCAGACCAAT

Gene: CPS_4809: Pyruvate dehydrogenase complex repressor
*
Alteromonadales bacterium TW-7

Site:
position = -91
score = 5.72843
sequence = CTTGGTATGACCAAT

Gene: ATW7_12388: Pyruvate dehydrogenase complex repressor
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -93
score = 5.79533
sequence = TTTGGTATGACCAAT

Gene: PSHAa0390: Pyruvate dehydrogenase complex repressor
*
Pseudoalteromonas tunicata D2

Site:
position = -58
score = 5.79533
sequence = TTTGGTATGACCAAT

Site:
position = -226
score = 4.74839
sequence = AGTGGTCTGACCATT

Gene: PTD2_08454: Pyruvate dehydrogenase complex repressor
*
Idiomarina baltica OS145

Site:
position = -36
score = 5.5493
sequence = TTTGGTCAGACCAAT

Gene: OS145_05110: Pyruvate dehydrogenase complex repressor
*
Idiomarina loihiensis L2TR

Site:
position = -23
score = 5.83534
sequence = TTTGGTCTGACCAAT

Gene: IL0457: Pyruvate dehydrogenase complex repressor
Pyruvate dehydrogenase complex repressor
aceE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3350: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03225: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002759: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Colwellia psychrerythraea 34H

Gene: CPS_4808: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12383: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0391: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08459: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Idiomarina baltica OS145

Gene: OS145_05105: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Idiomarina loihiensis L2TR

Gene: IL0458: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
CPS_4899
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_4807: hypothetical protein
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
hypothetical protein
aceF
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3351: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03224: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002764: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Colwellia psychrerythraea 34H

Gene: CPS_4806: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12378: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0392: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08464: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Idiomarina baltica OS145

Gene: OS145_05100: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Idiomarina loihiensis L2TR

Gene: IL0459: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpdA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_3352: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03223: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002774: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Colwellia psychrerythraea 34H

Gene: CPS_4805: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Alteromonadales bacterium TW-7

Gene: ATW7_12373: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa0393: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_08469: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Idiomarina baltica OS145

Gene: OS145_05095: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
 
Idiomarina loihiensis L2TR

Gene: IL0460: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
GHTCC_010100002769
 
Pseudoalteromonas atlantica T6c
 
Alteromonas macleodii 'Deep ecotype'
 
Glaciecola sp. HTCC2999

Gene: GHTCC_010100002769: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
 
CRON 3.
cyoA
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1290: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03912: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -79
score = 4.92943
sequence = CTTGGGTTTACCGAT

Gene: PSHAa2231: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
cyoB
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1291: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03911: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2230: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
cyoC
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1292: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03910: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2229: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
cyoD
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1293: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03909: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2228: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
cyoE
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1294: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_03908: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAa2227: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
 
Pseudoalteromonas tunicata D2
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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