Regulog PdhR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Pyruvate metabolism
Effector:	Pyruvate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - PdhR
By TF family - GntR/Others
By effector - Pyruvate
By pathway - Pyruvate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	4	1
Alteromonas macleodii 'Deep ecotype'	4	1
Glaciecola sp. HTCC2999	8	2
Colwellia psychrerythraea 34H	7	2
Alteromonadales bacterium TW-7	7	2
Pseudoalteromonas haloplanktis TAC125	12	3
Pseudoalteromonas tunicata D2	7	2
Idiomarina baltica OS145	4	1
Idiomarina loihiensis L2TR	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
oadG	Pseudoalteromonas atlantica T6c Gene: Patl_3013: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02842: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	* Glaciecola sp. HTCC2999 Site: position = -221 score = 6.04917 sequence = ATTGGTCTTACCAAT Gene: GHTCC_010100009300: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Colwellia psychrerythraea 34H Gene: CPS_1048: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	* Alteromonadales bacterium TW-7 Site: position = -118 score = 5.95911 sequence = ATTGGTTTTACCAAT Gene: ATW7_11636: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -123 score = 5.95911 sequence = ATTGGTTTTACCAAT Gene: PSHAa0538: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	* Pseudoalteromonas tunicata D2 Site: position = -136 score = 5.95911 sequence = ATTGGTTTTACCAAT Gene: PTD2_14632: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Idiomarina baltica OS145 Gene: OS145_10570: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Idiomarina loihiensis L2TR Gene: IL1736: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)	Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA	Pseudoalteromonas atlantica T6c Gene: Patl_3012: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02841: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009305: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	* Colwellia psychrerythraea 34H Site: position = -69 score = 4.6235 sequence = ATAAGTTTGACCAAT Gene: CPS_1049: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Alteromonadales bacterium TW-7 Gene: ATW7_11631: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0539: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_14637: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Idiomarina baltica OS145 Gene: OS145_10575: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Idiomarina loihiensis L2TR Gene: IL1735: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)	Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
oadB	Pseudoalteromonas atlantica T6c Gene: Patl_3011: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02840: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100009310: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Colwellia psychrerythraea 34H Gene: CPS_1050: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Alteromonadales bacterium TW-7 Gene: ATW7_11626: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0540: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_14642: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Idiomarina baltica OS145 Gene: OS145_10580: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Idiomarina loihiensis L2TR Gene: IL1734: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)	Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)

CRON 2.
pdhR	* Pseudoalteromonas atlantica T6c Site: position = -79 score = 6.04917 sequence = ATTGGTCTTACCAAT Gene: Patl_3349: Pyruvate dehydrogenase complex repressor	* Alteromonas macleodii 'Deep ecotype' Site: position = -104 score = 5.72313 sequence = AATGGTATTACCAAT Gene: MADE_03226: Pyruvate dehydrogenase complex repressor	* Glaciecola sp. HTCC2999 Site: position = -71 score = 5.72313 sequence = AATGGTATTACCAAT Gene: GHTCC_010100002754: Pyruvate dehydrogenase complex repressor	* Colwellia psychrerythraea 34H Site: position = -91 score = 6.04917 sequence = ATTGGTCTTACCAAT Site: position = -244 score = 5.70124 sequence = ATTGGTCAGACCAAT Gene: CPS_4809: Pyruvate dehydrogenase complex repressor	* Alteromonadales bacterium TW-7 Site: position = -91 score = 5.72843 sequence = CTTGGTATGACCAAT Gene: ATW7_12388: Pyruvate dehydrogenase complex repressor	* Pseudoalteromonas haloplanktis TAC125 Site: position = -93 score = 5.79533 sequence = TTTGGTATGACCAAT Gene: PSHAa0390: Pyruvate dehydrogenase complex repressor	* Pseudoalteromonas tunicata D2 Site: position = -58 score = 5.79533 sequence = TTTGGTATGACCAAT Site: position = -226 score = 4.74839 sequence = AGTGGTCTGACCATT Gene: PTD2_08454: Pyruvate dehydrogenase complex repressor	* Idiomarina baltica OS145 Site: position = -36 score = 5.5493 sequence = TTTGGTCAGACCAAT Gene: OS145_05110: Pyruvate dehydrogenase complex repressor	* Idiomarina loihiensis L2TR Site: position = -23 score = 5.83534 sequence = TTTGGTCTGACCAAT Gene: IL0457: Pyruvate dehydrogenase complex repressor	Pyruvate dehydrogenase complex repressor
aceE	Pseudoalteromonas atlantica T6c Gene: Patl_3350: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03225: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100002759: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Colwellia psychrerythraea 34H Gene: CPS_4808: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Alteromonadales bacterium TW-7 Gene: ATW7_12383: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0391: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Pseudoalteromonas tunicata D2 Gene: PTD2_08459: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Idiomarina baltica OS145 Gene: OS145_05105: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Idiomarina loihiensis L2TR Gene: IL0458: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
CPS_4899	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_4807: hypothetical protein	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	hypothetical protein
aceF	Pseudoalteromonas atlantica T6c Gene: Patl_3351: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03224: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100002764: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Colwellia psychrerythraea 34H Gene: CPS_4806: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Alteromonadales bacterium TW-7 Gene: ATW7_12378: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0392: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Pseudoalteromonas tunicata D2 Gene: PTD2_08464: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Idiomarina baltica OS145 Gene: OS145_05100: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Idiomarina loihiensis L2TR Gene: IL0459: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpdA	Pseudoalteromonas atlantica T6c Gene: Patl_3352: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03223: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100002774: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Colwellia psychrerythraea 34H Gene: CPS_4805: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Alteromonadales bacterium TW-7 Gene: ATW7_12373: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0393: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Pseudoalteromonas tunicata D2 Gene: PTD2_08469: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Idiomarina baltica OS145 Gene: OS145_05095: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Idiomarina loihiensis L2TR Gene: IL0460: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
GHTCC_010100002769	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999 Gene: GHTCC_010100002769: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase

CRON 3.
cyoA	Pseudoalteromonas atlantica T6c Gene: Patl_1290: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03912: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	* Pseudoalteromonas haloplanktis TAC125 Site: position = -79 score = 4.92943 sequence = CTTGGGTTTACCGAT Gene: PSHAa2231: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
cyoB	Pseudoalteromonas atlantica T6c Gene: Patl_1291: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03911: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2230: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
cyoC	Pseudoalteromonas atlantica T6c Gene: Patl_1292: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03910: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2229: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
cyoD	Pseudoalteromonas atlantica T6c Gene: Patl_1293: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03909: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2228: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
cyoE	Pseudoalteromonas atlantica T6c Gene: Patl_1294: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03908: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2227: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdhR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --