Regulog SahR - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Caulobacterales
- By trascription factor - SahR/SamR
- By TF family - ArsR
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 8 | 4 |
| Caulobacter segnis ATCC 21756 | 8 | 4 |
| Caulobacter sp. K31 | 11 | 3 |
| Phenylobacterium zucineum HLK1 | 6 | 3 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| metK |
*
Caulobacter crescentus CB15 Site: position = -90 score = 6.59176 sequence = GCATAAACATATCTTTATAT Gene: CC0050: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Caulobacter segnis ATCC 21756 Site: position = -85 score = 6.59176 sequence = GCATAAACATATCTTTATAT Gene: Cseg_0024: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Caulobacter sp. K31 Site: position = -83 score = 6.35648 sequence = ACATAAACTTATCTTTATAT Gene: Caul_0027: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Phenylobacterium zucineum HLK1 Site: position = -84 score = 6.14273 sequence = ACATAAAGATTTCTTTATAG Gene: PHZ_c3448: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 2. | |||||
| metE |
*
Caulobacter crescentus CB15 Site: position = -393 score = 6.67031 sequence = ACATAAAGAAATCTTTATAT Gene: CC0482: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
|
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 3. | |||||
| ahcY |
*
Caulobacter crescentus CB15 Site: position = -90 score = 6.62798 sequence = ACATAAAGATATCTTTATGC Gene: CC0257: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Caulobacter segnis ATCC 21756 Site: position = -86 score = 5.77583 sequence = GCATAAGGATATCTTTATGC Gene: Cseg_0217: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Caulobacter sp. K31 Site: position = -91 score = 5.81816 sequence = ATATAAAGAAATCCTTATGC Gene: Caul_4623: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Phenylobacterium zucineum HLK1 Site: position = -88 score = 6.13446 sequence = ACATAAAGACTTCTTTATAT Gene: PHZ_c0093: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| CRON 4. | |||||
| DUF1852 |
|
*
Caulobacter segnis ATCC 21756 Site: position = -362 score = 6.3927 sequence = ACATAAAGATATCCTTATGT Gene: Cseg_1811: Protein of unknown function DUF1852 |
|
|
Protein of unknown function DUF1852 |
| metE2 |
|
Gene: Cseg_1810: methionine synthase |
|
|
methionine synthase |
| CRON 5. | |||||
| sahR |
*
Caulobacter crescentus CB15 Site: position = -24 score = 6.93642 sequence = ACATAAAGATATCTTTATGT Gene: CC2141: Transcriptional regulator of methionine metabolism, ArsR family |
|
*
Caulobacter sp. K31 Site: position = -24 score = 6.93642 sequence = ACATAAAGATATCTTTATGT Gene: Caul_3410: Transcriptional regulator of methionine metabolism, ArsR family |
*
Phenylobacterium zucineum HLK1 Site: position = -26 score = 6.93642 sequence = ACATAAAGATATCTTTATGT Gene: PHZ_c2652: Transcriptional regulator of methionine metabolism, ArsR family |
Transcriptional regulator of methionine metabolism, ArsR family |
| metF |
Gene: CC2140: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Caulobacter segnis ATCC 21756 Site: position = -1000 score = 6.93642 sequence = ACATAAAGATATCTTTATGT Gene: Cseg_1280: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Caul_3409: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PHZ_c2651: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CC2139 |
Gene: CC2139: metallo-beta-lactamase superfamily protein |
Gene: Cseg_1281: metallo-beta-lactamase superfamily protein |
Gene: Caul_3408: metallo-beta-lactamase superfamily protein |
|
metallo-beta-lactamase superfamily protein |
| metH2 |
Gene: CC2138: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Cseg_1282: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Caul_3407: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PHZ_c2650: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| Caul_3406 |
|
|
Gene: Caul_3406: PIN domain protein |
|
PIN domain protein |
| Caul_3405 |
|
|
Gene: Caul_3405: PIN domain protein |
|
PIN domain protein |
| ddl |
|
|
Gene: Caul_3404: D-alanine--D-alanine ligase B (EC 6.3.2.4) |
|
D-alanine--D-alanine ligase B (EC 6.3.2.4) |
| Caul_3403 |
|
|
Gene: Caul_3403: hypothetical protein |
|
hypothetical protein |
| metH |
Gene: CC2137: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Cseg_1283: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Caul_3402: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: PHZ_c2649: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |