Regulog SahR - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - SahR/SamR
- By TF family - ArsR
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 7 | 3 |
| Erythrobacter sp. NAP1 | 6 | 3 |
| Novosphingobium aromaticivorans DSM 12444 | 6 | 3 |
| Sphingopyxis alaskensis RB2256 | 6 | 3 |
| Sphingobium japonicum UT26S | 6 | 3 |
| Sphingomonas wittichii RW1 | 7 | 4 |
| Zymomonas mobilis subsp. mobilis ZM4 | 7 | 4 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| sahR |
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Erythrobacter litoralis HTCC2594 Site: position = -18 score = 6.10685 sequence = ATATAACGATGTCTTTATAT Gene: ELI_10100: Transcriptional regulator of methionine metabolism, ArsR family |
*
Erythrobacter sp. NAP1 Site: position = -40 score = 5.17127 sequence = ATTTACACATATCTAAATAT Site: position = -32 score = 5.61492 sequence = ATATCTAAATATCTTTATAT Gene: NAP1_10493: Transcriptional regulator of methionine metabolism, ArsR family |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -48 score = 6.48688 sequence = ATATAAAGATATCTTTAAAC Site: position = -18 score = 6.2516 sequence = ATATAAAGGTTTCTTTATAT Gene: Saro_3209: Transcriptional regulator of methionine metabolism, ArsR family |
*
Sphingopyxis alaskensis RB2256 Site: position = -28 score = 6.2516 sequence = ATATAAAGAAAGCTTTATAT Gene: Sala_0034: Transcriptional regulator of methionine metabolism, ArsR family |
*
Sphingobium japonicum UT26S Site: position = -29 score = 6.79532 sequence = ATATAAAGATTTCTTTATAT Gene: SJA_C1-29170: Transcriptional regulator of methionine metabolism, ArsR family |
*
Sphingomonas wittichii RW1 Site: position = -16 score = 6.67031 sequence = ATATAAAGATTTCTTTATGT Gene: Swit_2402: Transcriptional regulator of methionine metabolism, ArsR family |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -186 score = 6.53384 sequence = TCATAAAGATATCTTTATAT Gene: ZMO1748: Transcriptional regulator of methionine metabolism, ArsR family |
Transcriptional regulator of methionine metabolism, ArsR family |
| metF |
Gene: ELI_10095: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: NAP1_10488: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Saro_3208: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Sala_0035: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: SJA_C1-29160: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Swit_2401: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: ZMO1747: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| metH2 |
Gene: ELI_10090: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: NAP1_10483: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Saro_3207: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Sala_0036: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: SJA_C1-29150: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Swit_2400: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: ZMO1746: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| ELI_10085 |
Gene: ELI_10085: GCN5-related N-acetyltransferase |
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GCN5-related N-acetyltransferase |
| metH |
Gene: ELI_10080: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: NAP1_10478: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Saro_3206: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Sala_0037: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: SJA_C1-29140: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Swit_2399: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: ZMO1745: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| CRON 2. | ||||||||
| metK |
*
Erythrobacter litoralis HTCC2594 Site: position = -49 score = 6.12659 sequence = ACATAAAGATTCCTTTATAT Gene: ELI_14285: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Erythrobacter sp. NAP1 Site: position = -80 score = 5.58287 sequence = ATATAAAGGTTTCCTTATGT Gene: NAP1_11848: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -30 score = 6.12659 sequence = ACATAAAGGTTTCTTTATAT Gene: Saro_0284: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Sphingopyxis alaskensis RB2256 Site: position = -39 score = 5.58287 sequence = ACATAAAGCTTCCTTTATAT Gene: Sala_3139: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Sphingobium japonicum UT26S Site: position = -53 score = 5.84036 sequence = ACATAAACTTTTCTTTATGT Gene: SJA_C1-12140: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Sphingomonas wittichii RW1 Site: position = -79 score = 5.71574 sequence = ATATAACGAAGTCTTTATAT Gene: Swit_3373: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -187 score = 5.20808 sequence = ATATAAGGAAAGATTTATAT Gene: ZMO0273: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 3. | ||||||||
| metE |
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*
Sphingomonas wittichii RW1 Site: position = -558 score = 6.2516 sequence = ATATAAAGTTTTCTTTATAT Gene: Swit_4786: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -316 score = 6.48935 sequence = ATATAAACACATCTTTATAT Gene: ZMO1000: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 4. | ||||||||
| ahcY |
*
Erythrobacter litoralis HTCC2594 Site: position = -110 score = 5.70788 sequence = ATATAAAGGAATCGTTATAT Gene: ELI_05040: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Erythrobacter sp. NAP1 Site: position = -115 score = 6.2516 sequence = ATATAAAGAAAACTTTATAT Gene: NAP1_04180: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -105 score = 6.25946 sequence = ATATAAAGAAGTCTTTATAT Gene: Saro_2003: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Sphingopyxis alaskensis RB2256 Site: position = -118 score = 6.09037 sequence = ATATAAAGAAAAGTTTATAT Gene: Sala_0163: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Sphingobium japonicum UT26S Site: position = -120 score = 6.12659 sequence = ACATAAAGAAAACTTTATAT Gene: SJA_C1-16830: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Sphingomonas wittichii RW1 Site: position = -102 score = 6.2516 sequence = ATATAAAGAAACCTTTATAT Gene: Swit_2674: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -231 score = 5.7794 sequence = ACATAAAGAATTATTTATAT Gene: ZMO0182: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |