Regulog NrdR - Caulobacterales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Caulobacterales
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 3 | 3 |
| Caulobacter segnis ATCC 21756 | 3 | 3 |
| Caulobacter sp. K31 | 3 | 3 |
| Phenylobacterium zucineum HLK1 | 3 | 3 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| nrdA |
*
Caulobacter crescentus CB15 Site: position = -88 score = 5.52213 sequence = CCACAAGATATAGCGG Gene: CC3492: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Caulobacter segnis ATCC 21756 Site: position = -72 score = 5.52213 sequence = CCACAAGATATAGCGG Site: position = -303 score = 5.74432 sequence = CCCCAACATCTTGTGG Gene: Cseg_3903: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Caulobacter sp. K31 Site: position = -94 score = 5.67878 sequence = CCACAAGATGTAGCGG Gene: Caul_4661: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Phenylobacterium zucineum HLK1 Site: position = -71 score = 5.54857 sequence = CCACAACATGTAGGGG Gene: PHZ_c0341: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| CRON 2. | |||||
| nrdB |
*
Caulobacter crescentus CB15 Site: position = -108 score = 5.58334 sequence = TCACAACATCTTGTGG Site: position = -76 score = 3.38218 sequence = CCACTAGATGAACCGA Gene: CC0260: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Caulobacter segnis ATCC 21756 Site: position = -129 score = 3.90243 sequence = CTCCTCTATCTTGTGG Site: position = -98 score = 4.72275 sequence = ACACTAGATGTGGTGG Gene: Cseg_3897: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Caulobacter sp. K31 Site: position = -87 score = 3.70634 sequence = CCACTAGATGCGGCCG Site: position = -118 score = 5.66871 sequence = CCACAACATGTTGTGT Gene: Caul_4709: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
*
Phenylobacterium zucineum HLK1 Site: position = -89 score = 3.48604 sequence = ACTCTAGATGCGGCGT Site: position = -57 score = 5.45484 sequence = CCACAAGATGTTGCGT Gene: PHZ_c0344: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 3. | |||||
| nrdJ |
*
Caulobacter crescentus CB15 Site: position = -44 score = 4.35359 sequence = CCGCAACATCTATTGA Site: position = -76 score = 5.59182 sequence = CTTCAACATCTTGTGG Gene: CC1889: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Caulobacter segnis ATCC 21756 Site: position = -134 score = 4.35359 sequence = CCGCAACATCTATTGA Site: position = -166 score = 5.59182 sequence = CTTCAACATCTTGTGG Gene: Cseg_2178: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Caulobacter sp. K31 Site: position = -118 score = 5.59182 sequence = CTTCAACATCTTGTGG Site: position = -86 score = 3.62827 sequence = ACCCCACATCTATTGA Gene: Caul_2560: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Phenylobacterium zucineum HLK1 Site: position = -61 score = 4.87479 sequence = CCCCAACATCTATTGC Site: position = -93 score = 3.24628 sequence = AGTCGATATGTTGGGG Gene: PHZ_c1855: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |