Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 3 2
Magnetospirillum magnetotacticum MS-1 1 1
Magnetospirillum magneticum AMB-1 1 1
Azospirillum sp. B510 1 1
Rhodospirillum centenum SW 3 3
Gluconacetobacter diazotrophicus PAl 5 3 2
Acetobacter pasteurianus IFO 3283-01 2 1
Gluconobacter oxydans 621H 2 1
Granulibacter bethesdensis CGDNIH1 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdJ
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -195
score = 4.72459
sequence = AAGCTAGATCTTGTGG

Gene: Rru_A2441: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*3
Magnetospirillum magnetotacticum MS-1

Site:
position = -207
score = 4.12038
sequence = ACACAATATGATGTGA

Site:
position = -123
score = 5.42639
sequence = CCACAAGATATTGTGG

Gene: Magn03007767: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)

Gene: Magn03000111: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)

Gene: Magn03001906: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Magnetospirillum magneticum AMB-1

Site:
position = -131
score = 4.12038
sequence = ACACAATATGATGTGA

Site:
position = -47
score = 5.49864
sequence = CCACTAGATATTGTGG

Gene: amb2746: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Azospirillum sp. B510

Site:
position = -270
score = 4.42084
sequence = CCACAATATCTAGCAG

Gene: AZL_002950: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Rhodospirillum centenum SW

Site:
position = -143
score = 4.42526
sequence = CCACAAAATCTCGTTG

Site:
position = -125
score = 3.78058
sequence = GCACGAGAACTCGTGG

Site:
position = -93
score = 4.73818
sequence = ACACAGCATCTTGGGG

Site:
position = -175
score = 3.69594
sequence = ACCCTATAAGCGGTGT

Gene: RC1_0921: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -78
score = 5.19412
sequence = CCACAATATACAGTGG

Gene: Gdia_1112: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_02280: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
Gluconobacter oxydans 621H

Gene: GOX1114: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -159
score = 4.72322
sequence = CCACAGGATTTTGTGT

Gene: GbCGDNIH1_1737: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1)
 
CRON 2.
nrdA
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -259
score = 4.70533
sequence = CCACAATATCCGGGGC

Gene: Rru_A1444: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
*
Rhodospirillum centenum SW

Site:
position = -76
score = 5.00348
sequence = CCTCTAGATGTGGTGG

Gene: RC1_3477: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -79
score = 4.90728
sequence = CCGCGATATGTAGGGG

Gene: Gdia_0051: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -77
score = 4.20925
sequence = GCACGAGATATGGTGC

Site:
position = -109
score = 5.00985
sequence = TCACTAGATATAGGGG

Gene: APA01_10600: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Gluconobacter oxydans 621H

Site:
position = -163
score = 5.2311
sequence = CCACTATATCTAGGGC

Gene: GOX1993: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -123
score = 4.2361
sequence = CCAATATATGTGGGGT

Site:
position = -154
score = 4.45011
sequence = ACCCTATATGGTGTGT

Gene: GbCGDNIH1_0887: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1445: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
*
Rhodospirillum centenum SW

Site:
position = -23
score = 5.12818
sequence = CCCCTAGATATAGTGT

Gene: RC1_3496: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0052: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_10610: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Gluconobacter oxydans 621H

Gene: GOX1994: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_0888: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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