Regulog NrdR - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 3 | 2 |
| Magnetospirillum magnetotacticum MS-1 | 1 | 1 |
| Magnetospirillum magneticum AMB-1 | 1 | 1 |
| Azospirillum sp. B510 | 1 | 1 |
| Rhodospirillum centenum SW | 3 | 3 |
| Gluconacetobacter diazotrophicus PAl 5 | 3 | 2 |
| Acetobacter pasteurianus IFO 3283-01 | 2 | 1 |
| Gluconobacter oxydans 621H | 2 | 1 |
| Granulibacter bethesdensis CGDNIH1 | 3 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nrdJ |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -195 score = 4.72459 sequence = AAGCTAGATCTTGTGG Gene: Rru_A2441: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*3
Magnetospirillum magnetotacticum MS-1 Site: position = -207 score = 4.12038 sequence = ACACAATATGATGTGA Site: position = -123 score = 5.42639 sequence = CCACAAGATATTGTGG Gene: Magn03007767: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) Gene: Magn03000111: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) Gene: Magn03001906: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Magnetospirillum magneticum AMB-1 Site: position = -131 score = 4.12038 sequence = ACACAATATGATGTGA Site: position = -47 score = 5.49864 sequence = CCACTAGATATTGTGG Gene: amb2746: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Azospirillum sp. B510 Site: position = -270 score = 4.42084 sequence = CCACAATATCTAGCAG Gene: AZL_002950: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Rhodospirillum centenum SW Site: position = -143 score = 4.42526 sequence = CCACAAAATCTCGTTG Site: position = -125 score = 3.78058 sequence = GCACGAGAACTCGTGG Site: position = -93 score = 4.73818 sequence = ACACAGCATCTTGGGG Site: position = -175 score = 3.69594 sequence = ACCCTATAAGCGGTGT Gene: RC1_0921: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -78 score = 5.19412 sequence = CCACAATATACAGTGG Gene: Gdia_1112: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Gene: APA01_02280: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Gene: GOX1114: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -159 score = 4.72322 sequence = CCACAGGATTTTGTGT Gene: GbCGDNIH1_1737: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) |
| CRON 2. | ||||||||||
| nrdA |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -259 score = 4.70533 sequence = CCACAATATCCGGGGC Gene: Rru_A1444: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
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*
Rhodospirillum centenum SW Site: position = -76 score = 5.00348 sequence = CCTCTAGATGTGGTGG Gene: RC1_3477: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -79 score = 4.90728 sequence = CCGCGATATGTAGGGG Gene: Gdia_0051: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -77 score = 4.20925 sequence = GCACGAGATATGGTGC Site: position = -109 score = 5.00985 sequence = TCACTAGATATAGGGG Gene: APA01_10600: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Gluconobacter oxydans 621H Site: position = -163 score = 5.2311 sequence = CCACTATATCTAGGGC Gene: GOX1993: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -123 score = 4.2361 sequence = CCAATATATGTGGGGT Site: position = -154 score = 4.45011 sequence = ACCCTATATGGTGTGT Gene: GbCGDNIH1_0887: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: Rru_A1445: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
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*
Rhodospirillum centenum SW Site: position = -23 score = 5.12818 sequence = CCCCTAGATATAGTGT Gene: RC1_3496: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: Gdia_0052: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: APA01_10610: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: GOX1994: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: GbCGDNIH1_0888: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |